Variant report

Variant	rs539017746
Chromosome Location	chr2:76905499-76905500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1006275	chr2:76885103-76929056	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1010119	chr2:76904730-76949552	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76900000-76905600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:76904600-76906600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:76904800-76905600	Enhancers	Brain Hippocampus Middle	brain
4	chr2:76904800-76906000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:76904800-76906600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:76904800-76907200	Enhancers	Fetal Brain Male	brain
7	chr2:76905000-76908000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:76905200-76905800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:76905200-76906400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:76905200-76906400	Enhancers	Fetal Brain Female	brain
11	chr2:76905200-76906600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:76905400-76905600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:76905400-76906000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr2:76905400-76906000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr2:76905400-76906400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:76905400-76906600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr2:76905400-76906600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links