Variant report

Variant	rs539021955
Chromosome Location	chr4:57262046-57262047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:57262027-57262661	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000270147	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv829940	chr4:57072341-57262730	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv530121	chr4:57167367-57695576	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv4347	chr4:57261404-57280595	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57254200-57273800	Weak transcription	Spleen	Spleen
2	chr4:57254400-57268400	Weak transcription	Lung	lung
3	chr4:57254400-57273600	Weak transcription	Pancreas	Pancrea
4	chr4:57254600-57264000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:57254600-57271600	Weak transcription	Ovary	ovary
6	chr4:57254600-57276400	Weak transcription	Psoas Muscle	Psoas
7	chr4:57254600-57280200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:57254800-57264000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:57254800-57264000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:57254800-57271600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:57254800-57273200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:57254800-57275200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:57254800-57275400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:57254800-57276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:57254800-57276400	Weak transcription	Right Ventricle	heart
16	chr4:57254800-57276600	Weak transcription	Left Ventricle	heart
17	chr4:57254800-57287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:57255000-57262200	Weak transcription	A549	lung
19	chr4:57255000-57264400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:57255000-57264800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:57255000-57265600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:57255000-57266000	Weak transcription	Primary B cells from cord blood	blood
23	chr4:57255000-57266200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:57255000-57266200	Weak transcription	NH-A	brain
25	chr4:57255000-57266400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:57255000-57266400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:57255000-57266600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:57255000-57266600	Weak transcription	HSMM	muscle
29	chr4:57255000-57266800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:57255000-57269200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:57255000-57271400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:57255200-57262200	Weak transcription	Fetal Lung	lung
33	chr4:57255200-57262200	Weak transcription	Osteobl	bone
34	chr4:57255200-57264000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:57255200-57264000	Weak transcription	Fetal Stomach	stomach
36	chr4:57255200-57266200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:57255200-57266200	Weak transcription	HUVEC	blood vessel
38	chr4:57255200-57266400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:57255200-57266800	Weak transcription	Fetal Kidney	kidney
40	chr4:57255200-57266800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:57255200-57267200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:57255200-57267400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:57255200-57271600	Weak transcription	NHEK	skin
44	chr4:57255200-57272200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:57255200-57275600	Weak transcription	NHLF	lung
46	chr4:57255200-57276400	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:57255200-57276600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr4:57255200-57276600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr4:57255200-57276600	Weak transcription	Brain Substantia Nigra	brain
50	chr4:57255400-57262400	Weak transcription	NHDF-Ad	bronchial

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