Variant report

Variant	rs539028072
Chromosome Location	chr4:1243494-1243495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:1241861-1243545	MCF-7	breast:	n/a	n/a
2	MAX	chr4:1242760-1243686	ECC-1	luminal epithelium:	n/a	n/a
3	CTCF	chr4:1243360-1243510	GM06990	blood:	n/a	n/a
4	HCFC1	chr4:1241947-1243495	K562	blood:	n/a	n/a
5	E2F6	chr4:1242632-1243546	K562	blood:	n/a	chr4:1243056-1243067
6	POLR2A	chr4:1240218-1243708	MCF-7	breast:	n/a	n/a
7	NFIC	chr4:1243284-1244192	GM12878	blood:	n/a	n/a
8	YY1	chr4:1242701-1243700	HepG2	liver:	n/a	chr4:1243499-1243513 chr4:1243010-1243024
9	MAX	chr4:1242774-1243680	MCF-7	breast:	n/a	n/a
10	RELA	chr4:1241794-1244278	GM12891	blood:	n/a	n/a
11	POLR2A	chr4:1240624-1244947	GM12878	blood:	n/a	n/a
12	CTCF	chr4:1243402-1243843	GM12878	blood:	n/a	n/a
13	TAF1	chr4:1242916-1243657	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr4:1241282-1243805	IMR90	lung:	n/a	n/a
15	POLR2A	chr4:1239447-1245326	K562	blood:	n/a	n/a
16	POLR2A	chr4:1240894-1244220	HUVEC	blood vessel:	n/a	n/a
17	CTCF	chr4:1243460-1243610	GM12866	blood:	n/a	n/a
18	POLR2A	chr4:1241824-1244039	GM12878	blood:	n/a	n/a
19	CTCF	chr4:1243360-1243510	HPF	lung:	n/a	n/a
20	POLR2A	chr4:1241557-1243632	HL-60	blood:	n/a	n/a
21	TAF1	chr4:1242787-1243783	GM12878	blood:	n/a	n/a
22	MAZ	chr4:1241913-1243998	GM12878	blood:	n/a	n/a
23	E2F6	chr4:1241854-1243571	K562	blood:	n/a	chr4:1242460-1242469 chr4:1242507-1242516 chr4:1243056-1243067 chr4:1242522-1242534 chr4:1242094-1242104
24	HEY1	chr4:1242954-1243989	HepG2	liver:	n/a	chr4:1243072-1243087 chr4:1242970-1242985 chr4:1243070-1243085
25	TBP	chr4:1243488-1243856	GM12878	blood:	n/a	n/a
26	MAX	chr4:1241112-1244105	A549	lung:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
27	POLR2A	chr4:1242644-1243529	A549	lung:	n/a	n/a
28	CTCF	chr4:1243420-1243570	AG04449	skin:	n/a	n/a
29	CTBP2	chr4:1243074-1243958	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAX	chr4:1240344-1243648	NB4	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
31	CTCF	chr4:1243420-1243570	GM12874	blood:	n/a	n/a
32	POLR2A	chr4:1242794-1243587	Hela-S3	cervix:	n/a	n/a
33	TAF1	chr4:1241698-1243630	HepG2	liver:	n/a	n/a
34	TBL1XR1	chr4:1242988-1244322	GM12878	blood:	n/a	n/a
35	POLR2A	chr4:1243006-1244182	GM12878	blood:	n/a	n/a
36	CTCF	chr4:1243486-1243522	GM12878	blood:	n/a	n/a
37	MAZ	chr4:1241498-1243990	K562	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564
38	RCOR1	chr4:1243359-1243503	K562	blood:	n/a	n/a
39	POLR2A	chr4:1242912-1243590	PFSK-1	brain:	n/a	n/a
40	POLR2A	chr4:1241767-1243529	H1-neurons	neurons:	n/a	n/a
41	POLR2A	chr4:1240777-1244120	GM19099	blood:	n/a	n/a
42	POLR2A	chr4:1241863-1243806	GM10847	blood:	n/a	n/a
43	MAX	chr4:1241001-1244334	HCT-116	colon:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
44	USF1	chr4:1243057-1243615	ECC-1	luminal epithelium:	n/a	n/a
45	YY1	chr4:1241303-1243683	GM12892	blood:	n/a	chr4:1243499-1243513 chr4:1242380-1242391 chr4:1241911-1241923 chr4:1242412-1242423 chr4:1241880-1241894 chr4:1242451-1242465 chr4:1241912-1241920 chr4:1243010-1243024
46	CTCF	chr4:1243468-1243549	GM19239	blood:	n/a	n/a
47	TBP	chr4:1243034-1244050	HepG2	liver:	n/a	n/a
48	E2F6	chr4:1241274-1244236	K562	blood:	n/a	chr4:1242460-1242469 chr4:1242507-1242516 chr4:1243056-1243067 chr4:1242522-1242534 chr4:1242094-1242104
49	CTCF	chr4:1243440-1243590	HCM	heart:	n/a	n/a
50	REST	chr4:1241114-1243788	H1-neurons	neurons:	n/a	chr4:1241467-1241480 chr4:1242386-1242399 chr4:1241266-1241276 chr4:1242363-1242376 chr4:1243612-1243632 chr4:1242093-1242103 chr4:1241445-1241458 chr4:1242360-1242373

No.	Distal block	Cell Line	Cell type
1	chr4:1218830..1221524-chr4:1242783..1244802,2	MCF-7	breast:
2	chr4:1075158..1077915-chr4:1242318..1244508,3	MCF-7	breast:
3	chr4:1241391..1244976-chr4:1289369..1292052,3	MCF-7	breast:
4	chr4:1103766..1108037-chr4:1241801..1244610,3	K562	blood:
5	chr4:1207031..1209938-chr4:1240960..1243998,4	K562	blood:
6	chr4:1159747..1163015-chr4:1240558..1244483,3	K562	blood:
7	chr4:1198322..1201004-chr4:1242228..1244589,3	K562	blood:
8	chr4:1241603..1244374-chr4:1357960..1359883,2	MCF-7	breast:
9	chr4:986510..988350-chr4:1240959..1243694,2	MCF-7	breast:
10	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
11	chr4:1242705..1243544-chr9:125590357..125590943,2	Hela-S3	cervix:
12	chr4:1242036..1244791-chr4:1580291..1583222,3	MCF-7	breast:
13	chr4:1236833..1250005-chr4:1276188..1292579,54	MCF-7	breast:
14	chr1:11968198..11969063-chr4:1242972..1243738,2	Hela-S3	cervix:
15	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
16	chr4:1242623..1243687-chr4:1339944..1341149,3	MCF-7	breast:
17	chr4:1240883..1245378-chr4:1339091..1342291,13	K562	blood:
18	chr11:65188897..65190954-chr4:1242152..1244163,2	MCF-7	breast:
19	chr4:1242091..1248517-chr4:1279714..1285424,16	MCF-7	breast:
20	chr4:1217670..1219491-chr4:1243014..1244747,2	K562	blood:
21	chr4:1159229..1162099-chr4:1242725..1245069,2	K562	blood:
22	chr4:1240390..1245150-chr4:1578422..1582537,5	MCF-7	breast:
23	chr4:926176..927850-chr4:1242051..1244022,2	K562	blood:
24	chr4:1242456..1244235-chr4:1794617..1797238,2	MCF-7	breast:
25	chr4:1243202..1244078-chrX:118925366..118926206,2	Hela-S3	cervix:
26	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
27	chr4:1003725..1006599-chr4:1238644..1243840,5	MCF-7	breast:
28	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
29	chr4:990681..994690-chr4:1238010..1243594,6	MCF-7	breast:
30	chr4:1207031..1209440-chr4:1241875..1243998,2	K562	blood:
31	chr4:1216435..1221821-chr4:1240439..1244617,5	MCF-7	breast:
32	chr4:1242011..1244764-chr6:161122775..161125242,2	MCF-7	breast:
33	chr4:1241391..1244102-chr4:1870513..1873994,3	MCF-7	breast:
34	chr4:1238004..1248980-chr4:1275065..1286840,30	K562	blood:
35	chr4:1238004..1246805-chr4:1279798..1288475,25	K562	blood:

Variant related genes	Relation type
CTBP1-AS2	TF binding region
CTBP1	TF binding region
ENSG00000178222	Chromatin interaction
ENSG00000251652	Chromatin interaction
ENSG00000109685	Chromatin interaction
ENSG00000159674	Chromatin interaction
ENSG00000240455	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000122194	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000145217	Chromatin interaction
ENSG00000068078	Chromatin interaction
ENSG00000127419	Chromatin interaction
ENSG00000273179	Chromatin interaction
ENSG00000244459	Chromatin interaction
ENSG00000198918	Chromatin interaction
ENSG00000127418	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000136940	Chromatin interaction
ENSG00000159692	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
11	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv1811773	chr4:1228251-1287474	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
23	esv1800629	chr4:1228451-1287274	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	esv1812851	chr4:1228451-1287274	Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	esv1823612	chr4:1228451-1287274	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
26	esv1825633	chr4:1228451-1287274	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
27	esv1844406	chr4:1230397-1243775	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
28	esv1836927	chr4:1231363-1244037	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
29	esv1838677	chr4:1231540-1274734	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	nsv822433	chr4:1232688-1246206	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
31	nsv878334	chr4:1232910-1254930	Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	esv1839490	chr4:1237014-1254930	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv878335	chr4:1237014-1254930	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	nsv593282	chr4:1238363-1243573	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
35	nsv878336	chr4:1238859-1254930	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
36	nsv878337	chr4:1240091-1254930	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
37	esv3338577	chr4:1240652-1245250	Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
38	nsv593285	chr4:1240911-1243617	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	nsv593287	chr4:1240962-1245277	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	esv3422320	chr4:1241377-1243925	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
41	esv3325724	chr4:1241677-1244875	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
42	esv18068	chr4:1241724-1244283	Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
43	esv1848270	chr4:1241752-1243573	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
44	esv1795771	chr4:1241752-1243775	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
45	esv1796734	chr4:1241752-1243775	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
46	esv1801461	chr4:1241752-1243775	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
47	esv1838956	chr4:1241752-1244199	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
48	esv1837719	chr4:1241752-1245277	Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
49	esv1839051	chr4:1241752-1245277	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
50	esv1841123	chr4:1241752-1245277	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1240400-1243800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr4:1240400-1244200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:1240800-1243600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:1240800-1243600	Active TSS	HSMMtube	muscle
5	chr4:1241000-1243600	Active TSS	A549	lung
6	chr4:1241000-1244000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr4:1241000-1244200	Active TSS	Ovary	ovary
8	chr4:1241200-1243600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:1241200-1243600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:1241200-1243600	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:1241200-1243600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:1241200-1243600	Active TSS	Primary T cells from cord blood	blood
13	chr4:1241200-1243600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr4:1241200-1243600	Active TSS	Sigmoid Colon	Sigmoid Colon
15	chr4:1241200-1243600	Active TSS	Hela-S3	cervix
16	chr4:1241200-1243800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:1241200-1243800	Active TSS	Aorta	Aorta
18	chr4:1241200-1243800	Active TSS	Brain Angular Gyrus	brain
19	chr4:1241200-1243800	Active TSS	Brain Anterior Caudate	brain
20	chr4:1241200-1243800	Active TSS	Colon Smooth Muscle	Colon
21	chr4:1241200-1243800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr4:1241200-1243800	Active TSS	Lung	lung
23	chr4:1241200-1243800	Active TSS	HepG2	liver
24	chr4:1241200-1243800	Active TSS	NHDF-Ad	bronchial
25	chr4:1241200-1244000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:1241200-1244000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:1241200-1244000	Active TSS	Right Atrium	heart
28	chr4:1241200-1244000	Active TSS	HSMM	muscle
29	chr4:1241200-1244200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr4:1241400-1243600	Active TSS	H1 Cell Line	embryonic stem cell
31	chr4:1241400-1243600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:1241400-1243600	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr4:1241400-1243600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:1241400-1243600	Active TSS	Primary B cells from peripheral blood	blood
35	chr4:1241400-1243600	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr4:1241400-1243600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr4:1241400-1243600	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr4:1241400-1243600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:1241400-1243600	Active TSS	Muscle Satellite Cultured Cells	--
40	chr4:1241400-1243600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:1241400-1243600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:1241400-1243600	Active TSS	Liver	Liver
43	chr4:1241400-1243600	Active TSS	Brain Cingulate Gyrus	brain
44	chr4:1241400-1243600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:1241400-1243600	Active TSS	Brain Substantia Nigra	brain
46	chr4:1241400-1243600	Active TSS	Duodenum Mucosa	Duodenum
47	chr4:1241400-1243600	Active TSS	Esophagus	oesophagus
48	chr4:1241400-1243600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr4:1241400-1243600	Active TSS	Fetal Intestine Large	intestine
50	chr4:1241400-1243600	Active TSS	Fetal Muscle Leg	muscle

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