Variant report

Variant	rs539030864
Chromosome Location	chr3:28167779-28167780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv508214	chr3:28157554-28198530	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2502603	chr3:28167062-28168554	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1976373	chr3:28167268-28167956	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3498638	chr3:28167314-28167891	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3463299	chr3:28167343-28167839	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3498637	chr3:28167358-28167876	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3498635	chr3:28167367-28167834	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3463296	chr3:28167388-28167849	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3463295	chr3:28167399-28167852	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3463297	chr3:28167441-28167790	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3498636	chr3:28167452-28167805	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3463300	chr3:28167457-28167800	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3498639	chr3:28167457-28167800	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv1570870	chr3:28167473-28167799	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28167400-28168400	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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