Variant report

Variant	rs539031474
Chromosome Location	chr15:31355439-31355440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:31355430-31355480	LNCaP	prostate:	n/a
2	chr15:31355430-31355480	HMEC	breast:	n/a
3	chr15:31355430-31355480	HRPEpiC	eye:	n/a
4	chr15:31355430-31355480	NT2-D1	testis:	n/a
5	chr15:31355430-31355480	K562	blood:	n/a
6	chr15:31355430-31355480	SAEC	small airway:	n/a
7	chr15:31355430-31355480	HUVEC	blood vessel:	n/a
8	chr15:31355430-31355480	NH-A	brain:	n/a
9	chr15:31355430-31355480	GM12891	blood:	n/a
10	chr15:31355430-31355480	PrEC	prostate:	n/a
11	chr15:31355430-31355480	HepG2	liver:	n/a
12	chr15:31355430-31355480	MCF10A-Er-Src	breast:	n/a
13	chr15:31355430-31355480	GM12892	blood:	n/a
14	chr15:31355430-31355480	SK-N-SH_RA	brain:	n/a
15	chr15:31355430-31355480	NHDF-neo	bronchial:	n/a
16	chr15:31355430-31355480	T-47D	breast:	n/a
17	chr15:31355430-31355480	HEK293	kidney:	embryo
18	chr15:31355430-31355480	HL-60	blood:	n/a
19	chr15:31355430-31355480	RPTEC	kidney:	n/a
20	chr15:31355430-31355480	NB4	blood:	n/a
21	chr15:31355430-31355480	SK-N-MC	brain:	n/a
22	chr15:31355430-31355480	IMR90	lung:	fetal
23	chr15:31355430-31355480	HCT-116	colon:	n/a
24	chr15:31355430-31355480	HEEpiC	esophagus:	n/a
25	chr15:31355430-31355480	AG04449	skin:	fetal
26	chr15:31355430-31355480	H1-hESC	embryonic stem cell:	embryo
27	chr15:31355430-31355480	NHBE	bronchial:	n/a
28	chr15:31355430-31355480	PFSK-1	brain:	n/a
29	chr15:31355430-31355480	HNPCEpiC	eye:	n/a
30	chr15:31355430-31355480	HCM	heart:	n/a
31	chr15:31355430-31355480	Caco-2	colon:	n/a
32	chr15:31355430-31355480	ProgFib	skin:	n/a
33	chr15:31355430-31355480	CMK	blood:	n/a
34	chr15:31355430-31355480	Jurkat	blood:	n/a
35	chr15:31355430-31355480	HPAEpiC	pulmonary alveolar:	n/a
36	chr15:31355430-31355480	SK-N-SH	brain:	n/a
37	chr15:31355430-31355480	GM12878	blood:	n/a
38	chr15:31355430-31355480	PANC-1	pancreas:	n/a
39	chr15:31355430-31355480	GM06990	blood:	n/a
40	chr15:31355430-31355480	HCPEpiC	choroid plexus:	n/a
41	chr15:31355430-31355480	AG09319	gingival:	n/a
42	chr15:31355430-31355480	ovcar-3	ovarian:	n/a
43	chr15:31355430-31355480	HCF	heart:	n/a
44	chr15:31355430-31355480	Hepatocyte	liver:	n/a
45	chr15:31355430-31355480	AoSMC	blood vessel:	n/a
46	chr15:31355430-31355480	AG10803	skin:	n/a
47	chr15:31355430-31355480	Hela-S3	cervix:	n/a
48	chr15:31355430-31355480	A549	lung:	n/a
49	chr15:31355430-31355480	SKMC	muscle:	n/a
50	chr15:31355430-31355480	AG09309	skin:	n/a

No data

Variant related genes	Relation type
TRPM1	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
10	nsv903835	chr15:31312743-31384797	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
11	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
12	nsv431373	chr15:31341461-31369498	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	n/a
13	nsv431372	chr15:31341461-31409090	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv1036010	chr15:31348902-31375379	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	n/a
15	nsv1040840	chr15:31348902-31412706	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
16	nsv542316	chr15:31348902-31412706	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
17	nsv1046535	chr15:31352063-31392141	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
18	nsv1039726	chr15:31355383-31391286	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
19	nsv542317	chr15:31355383-31391286	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1045872	chr15:31355383-31396605	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31351400-31360000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:31352800-31355600	Enhancers	Fetal Brain Male	brain
3	chr15:31353000-31355600	Enhancers	Brain Germinal Matrix	brain
4	chr15:31353200-31363400	Weak transcription	Right Atrium	heart
5	chr15:31353400-31365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:31353600-31360200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:31354200-31355600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr15:31354400-31355600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:31354400-31363200	Weak transcription	Left Ventricle	heart
10	chr15:31354600-31355600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:31355000-31355600	Enhancers	Esophagus	oesophagus
12	chr15:31355200-31355600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:31355200-31355600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:31355200-31355600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr15:31355400-31355600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:31355400-31355600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
17	chr15:31355400-31355600	Enhancers	Spleen	Spleen
18	chr15:31355400-31355600	Enhancers	NHDF-Ad	bronchial

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