Variant report

Variant	rs539056110
Chromosome Location	chr6:146213539-146213540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146204410..146206507-chr6:146211730..146213654,2	MCF-7	breast:
2	chr6:146209846..146213898-chr6:146246538..146250051,3	K562	blood:

Variant related genes	Relation type
ENSG00000146414	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
2	chr6:146189400-146214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:146196600-146219600	Weak transcription	HMEC	breast
4	chr6:146197800-146219600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:146198200-146218600	Weak transcription	Fetal Heart	heart
6	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
7	chr6:146199800-146214400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:146200000-146214200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
10	chr6:146201200-146217400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:146201200-146230400	Weak transcription	NHEK	skin
13	chr6:146201800-146219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:146202800-146213800	Weak transcription	GM12878-XiMat	blood
15	chr6:146202800-146220000	Weak transcription	Thymus	Thymus
16	chr6:146203200-146219600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:146203400-146218600	Weak transcription	A549	lung
18	chr6:146204600-146214400	Weak transcription	Hela-S3	cervix
19	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:146205400-146214800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:146206600-146215400	Strong transcription	Adipose Nuclei	Adipose
22	chr6:146206800-146219600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:146207400-146217600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:146207800-146213600	Strong transcription	Primary T cells from cord blood	blood
25	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:146208000-146219000	Weak transcription	Small Intestine	intestine
27	chr6:146208200-146215400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:146208400-146215000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:146208400-146216800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:146208400-146218000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:146208400-146218800	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:146208800-146215400	Strong transcription	Fetal Thymus	thymus
33	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
34	chr6:146209000-146214800	Strong transcription	K562	blood
35	chr6:146209000-146216800	Strong transcription	Dnd41	blood
36	chr6:146209200-146215200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:146209400-146215000	Strong transcription	Primary B cells from cord blood	blood
38	chr6:146209400-146215200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:146209600-146215000	Strong transcription	Left Ventricle	heart
40	chr6:146209600-146215000	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:146209800-146219000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:146210200-146219800	Weak transcription	Gastric	stomach
43	chr6:146210200-146231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:146210400-146213600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:146210400-146213800	Weak transcription	Fetal Brain Female	brain
46	chr6:146210400-146213800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:146210400-146218800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:146210400-146218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:146210400-146218800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:146210400-146219600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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