Variant report

Variant	rs539062553
Chromosome Location	chr3:45901132-45901133
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45890000-45907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:45891800-45905200	Weak transcription	Psoas Muscle	Psoas
3	chr3:45894600-45906200	Genic enhancers	Dnd41	blood
4	chr3:45895600-45902200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:45896600-45902600	Weak transcription	Thymus	Thymus
6	chr3:45898200-45902400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:45898400-45902200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:45899200-45902800	Enhancers	Liver	Liver
9	chr3:45900400-45901200	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:45900400-45901400	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:45900400-45902200	Enhancers	GM12878-XiMat	blood
12	chr3:45900600-45901600	Weak transcription	Fetal Intestine Small	intestine
13	chr3:45900600-45902200	Weak transcription	Stomach Mucosa	stomach
14	chr3:45900800-45902200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:45901000-45901200	Enhancers	K562	blood
16	chr3:45901000-45902000	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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