Variant report

Variant	rs539074160
Chromosome Location	chr3:133748735-133748736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133646547..133649417-chr3:133747538..133750277,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221972	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3426811	chr3:133747687-133750235	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133746200-133749200	Active TSS	Right Atrium	heart
2	chr3:133746600-133749200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:133747000-133749000	Bivalent/Poised TSS	Colonic Mucosa	Colon
4	chr3:133747400-133748800	Active TSS	Gastric	stomach
5	chr3:133747600-133749000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
6	chr3:133747800-133749200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr3:133747800-133749400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr3:133747800-133749600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr3:133747800-133749800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr3:133748000-133748800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr3:133748000-133748800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:133748000-133748800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:133748000-133748800	Bivalent/Poised TSS	Spleen	Spleen
14	chr3:133748000-133748800	Bivalent/Poised TSS	HSMMtube	muscle
15	chr3:133748000-133748800	Bivalent/Poised TSS	NHDF-Ad	bronchial
16	chr3:133748000-133748800	Bivalent/Poised TSS	NHLF	lung
17	chr3:133748000-133749000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:133748000-133749000	Active TSS	Placenta Amnion	Placenta Amnion
19	chr3:133748000-133749200	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr3:133748000-133749200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr3:133748000-133749200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:133748000-133749200	Active TSS	Aorta	Aorta
23	chr3:133748000-133749400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr3:133748000-133749400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr3:133748000-133749400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:133748000-133749400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:133748000-133749400	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr3:133748000-133749600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr3:133748000-133749600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr3:133748200-133748800	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:133748200-133748800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
32	chr3:133748200-133748800	Active TSS	Hela-S3	cervix
33	chr3:133748200-133749000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
34	chr3:133748200-133749000	Bivalent/Poised TSS	Fetal Stomach	stomach
35	chr3:133748200-133749000	Active TSS	Small Intestine	intestine
36	chr3:133748200-133749200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:133748200-133749200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:133748200-133749200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:133748200-133749200	Active TSS	Brain Angular Gyrus	brain
40	chr3:133748200-133749400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:133748200-133749400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:133748200-133749400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
43	chr3:133748200-133749400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
44	chr3:133748200-133749400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr3:133748200-133749400	Active TSS	Ovary	ovary
46	chr3:133748200-133749400	Bivalent/Poised TSS	A549	lung
47	chr3:133748400-133748800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:133748400-133748800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:133748400-133748800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr3:133748400-133748800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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