Variant report

Variant	rs539076759
Chromosome Location	chr9:108372362-108372363
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108371809..108373559-chr9:108455418..108457234,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095209	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	esv3482635	chr9:108372167-108373527	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3482637	chr9:108372212-108373506	Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3482636	chr9:108372251-108373448	Weak transcription Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3482638	chr9:108372312-108373398	Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv10733	chr9:108372342-108373320	Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108321600-108397200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:108328000-108372800	Weak transcription	NHEK	skin
3	chr9:108333200-108400400	Weak transcription	HMEC	breast
4	chr9:108335400-108403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:108338400-108403400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:108340200-108372800	Weak transcription	Pancreas	Pancrea
7	chr9:108345600-108400000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:108347000-108399600	Weak transcription	Psoas Muscle	Psoas
9	chr9:108349400-108402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr9:108350800-108403800	Weak transcription	Fetal Heart	heart
11	chr9:108352600-108382400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:108353600-108385600	Weak transcription	Fetal Kidney	kidney
13	chr9:108354200-108373800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:108354400-108372400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:108354400-108372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:108354400-108372800	Weak transcription	Esophagus	oesophagus
17	chr9:108354400-108378200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:108354400-108385800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:108354400-108395800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:108354400-108395800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:108354400-108397200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:108354400-108397400	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:108354400-108400000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:108354400-108403600	Weak transcription	Brain Substantia Nigra	brain
25	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
26	chr9:108354600-108372600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:108354600-108373800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:108354600-108377800	Weak transcription	Spleen	Spleen
29	chr9:108354600-108382400	Weak transcription	Fetal Brain Male	brain
30	chr9:108354600-108389600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:108354600-108395600	Weak transcription	Brain Angular Gyrus	brain
32	chr9:108354600-108397000	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:108354600-108397200	Weak transcription	Aorta	Aorta
34	chr9:108354600-108401600	Weak transcription	GM12878-XiMat	blood
35	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:108354800-108379400	Weak transcription	Fetal Intestine Small	intestine
37	chr9:108354800-108396400	Weak transcription	Fetal Stomach	stomach
38	chr9:108355000-108373800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:108355200-108374200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:108355200-108404200	Weak transcription	Brain Germinal Matrix	brain
41	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:108355800-108374400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:108355800-108396800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:108355800-108397200	Weak transcription	Ovary	ovary
45	chr9:108356000-108403800	Weak transcription	Fetal Thymus	thymus
46	chr9:108356200-108372600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:108358200-108405000	Weak transcription	HUVEC	blood vessel
48	chr9:108359200-108384400	Weak transcription	NH-A	brain
49	chr9:108359800-108397000	Weak transcription	Liver	Liver
50	chr9:108360400-108385000	Weak transcription	Primary hematopoietic stem cells	blood

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