Variant report

Variant	rs539092500
Chromosome Location	chr3:109897852-109897853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3367527	chr3:109894762-109899060	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109896800-109898400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:109897400-109898200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:109897400-109898400	Enhancers	Brain Substantia Nigra	brain
4	chr3:109897400-109899600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:109897600-109898200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:109897600-109898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:109897600-109898400	Enhancers	Liver	Liver
8	chr3:109897600-109898800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:109897800-109898000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:109897800-109898000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:109897800-109898000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:109897800-109898200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:109897800-109898200	Enhancers	NHDF-Ad	bronchial
14	chr3:109897800-109898200	Enhancers	Osteobl	bone
15	chr3:109897800-109898400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:109897800-109900000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:109897800-109900000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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