Variant report

Variant	rs539111874
Chromosome Location	chr6:11787845-11787846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv12435	chr6:11786468-11791797	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11774000-11791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11786000-11791400	Weak transcription	NHEK	skin
3	chr6:11786200-11788600	Enhancers	Fetal Thymus	thymus
4	chr6:11786200-11790600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:11786200-11790800	Weak transcription	HMEC	breast
6	chr6:11786600-11788800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:11786600-11790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:11786800-11788200	Weak transcription	K562	blood
9	chr6:11786800-11790600	Weak transcription	Lung	lung
10	chr6:11787000-11788800	Enhancers	GM12878-XiMat	blood
11	chr6:11787000-11790600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:11787000-11791400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:11787200-11789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:11787400-11790800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:11787600-11788200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:11787800-11788200	Flanking Active TSS	Dnd41	blood
17	chr6:11787800-11788600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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