Variant report

Variant	rs539112319
Chromosome Location	chr18:29198437-29198438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29197834..29199382-chr18:29200132..29202800,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3409784	chr18:29197491-29200132	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29191200-29201400	Weak transcription	Fetal Brain Male	brain
2	chr18:29191400-29207000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29191400-29207800	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29191600-29205200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr18:29191800-29204800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr18:29191800-29207800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:29192200-29206200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr18:29192400-29217400	Weak transcription	Left Ventricle	heart
9	chr18:29194800-29205000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr18:29195200-29204800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr18:29195400-29205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr18:29195600-29206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:29197000-29205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr18:29197200-29210600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:29197400-29207800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr18:29197600-29204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr18:29197600-29204800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr18:29197600-29206400	Weak transcription	Fetal Intestine Small	intestine
20	chr18:29197600-29224800	Weak transcription	Brain Anterior Caudate	brain
21	chr18:29197600-29224800	Weak transcription	Brain Germinal Matrix	brain
22	chr18:29197800-29204800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr18:29197800-29206200	Weak transcription	GM12878-XiMat	blood
24	chr18:29198000-29200400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr18:29198400-29204000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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