Variant report

Variant	rs539119362
Chromosome Location	chr20:22202655-22202656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv828704	chr20:22201916-22202702	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22198200-22202800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr20:22198800-22203200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr20:22200800-22203400	Weak transcription	Fetal Stomach	stomach
4	chr20:22201800-22203000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:22202400-22203600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:22202400-22203800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr20:22202400-22204200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr20:22202600-22203400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr20:22202600-22203400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:22202600-22203800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr20:22202600-22204000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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