Variant report

Variant	rs539120761
Chromosome Location	chr2:56149564-56149565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PNPT1-3	chr2:56149543-56150074	NONHSAT070808
2	lnc-PNPT1-3	chr2:56149082-56149582	NONHSAT070807

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3430118	chr2:56147911-56152306	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56129200-56150200	Weak transcription	Pancreas	Pancrea
2	chr2:56138800-56149600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
3	chr2:56142200-56149800	Weak transcription	Gastric	stomach
4	chr2:56143800-56150400	Weak transcription	Spleen	Spleen
5	chr2:56144000-56149800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:56144800-56149600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:56146800-56150000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:56147400-56149800	Transcr. at gene 5' and 3'	Osteobl	bone
9	chr2:56147400-56151400	Active TSS	Aorta	Aorta
10	chr2:56148600-56149600	Active TSS	Placenta	Placenta
11	chr2:56148600-56149800	Flanking Active TSS	NHEK	skin
12	chr2:56148600-56151400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr2:56148600-56151600	Active TSS	Right Atrium	heart
14	chr2:56148800-56151400	Active TSS	Brain Anterior Caudate	brain
15	chr2:56149000-56149800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr2:56149000-56149800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:56149000-56150000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr2:56149000-56151200	Active TSS	Colon Smooth Muscle	Colon
19	chr2:56149000-56151400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:56149000-56151400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:56149000-56151400	Active TSS	Ovary	ovary
22	chr2:56149000-56151400	Active TSS	HSMMtube	muscle
23	chr2:56149200-56149600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr2:56149200-56149600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr2:56149200-56149600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
26	chr2:56149200-56149600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr2:56149200-56149600	Flanking Active TSS	NHLF	lung
28	chr2:56149200-56149800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:56149200-56150200	Active TSS	Stomach Smooth Muscle	stomach
30	chr2:56149200-56150400	Active TSS	Brain Hippocampus Middle	brain
31	chr2:56149200-56151000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:56149200-56151200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr2:56149200-56151200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr2:56149200-56151200	Bivalent/Poised TSS	NHDF-Ad	bronchial
35	chr2:56149200-56151400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr2:56149200-56151400	Active TSS	Brain Cingulate Gyrus	brain
37	chr2:56149200-56151600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
38	chr2:56149400-56149600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:56149400-56149600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:56149400-56149600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:56149400-56149600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr2:56149400-56149600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr2:56149400-56149600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:56149400-56149600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:56149400-56149600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
46	chr2:56149400-56149600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
47	chr2:56149400-56149600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
48	chr2:56149400-56149600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr2:56149400-56149600	Flanking Active TSS	Right Ventricle	heart
50	chr2:56149400-56149600	Active TSS	Skeletal Muscle Male	skeletal muscle

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