Variant report

Variant	rs539121706
Chromosome Location	chr1:94938154-94938155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv546851	chr1:94916649-94941376	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
2	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94914800-94985800	Weak transcription	NHLF	lung
4	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
5	chr1:94915800-94955400	Weak transcription	NHDF-Ad	bronchial
6	chr1:94915800-94956600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:94916000-94941800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:94916000-94957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:94916000-94969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:94916000-94970000	Weak transcription	Ovary	ovary
11	chr1:94916000-94970000	Weak transcription	Spleen	Spleen
12	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
13	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
14	chr1:94916200-94968400	Weak transcription	Gastric	stomach
15	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:94916200-94974200	Weak transcription	Lung	lung
17	chr1:94917200-94964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:94917800-94971800	Weak transcription	NHEK	skin
19	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:94918000-94942000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:94918000-94957000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:94918800-94941600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:94919000-94942800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:94920600-94948400	Weak transcription	Small Intestine	intestine
25	chr1:94921000-94957800	Weak transcription	Brain Germinal Matrix	brain
26	chr1:94923200-94942000	Weak transcription	Right Ventricle	heart
27	chr1:94923600-94956400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:94923600-94956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:94923800-94941800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:94923800-94948000	Weak transcription	NH-A	brain
31	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
32	chr1:94924000-94947000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr1:94924000-94964400	Weak transcription	GM12878-XiMat	blood
34	chr1:94924800-94968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:94926600-94950400	Weak transcription	Primary B cells from cord blood	blood
36	chr1:94929000-94938600	Weak transcription	Brain Substantia Nigra	brain
37	chr1:94929000-94954200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:94929000-94957200	Weak transcription	Colonic Mucosa	Colon
39	chr1:94929200-94938200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:94929200-94941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:94929400-94941600	Weak transcription	HUVEC	blood vessel
42	chr1:94929400-94947000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:94929400-94980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr1:94929600-94938800	Strong transcription	HepG2	liver
45	chr1:94929600-94942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:94929600-94955400	Weak transcription	Fetal Heart	heart
47	chr1:94929600-94985400	Weak transcription	Fetal Brain Female	brain
48	chr1:94929800-94944800	Weak transcription	A549	lung
49	chr1:94929800-94945200	Weak transcription	Stomach Mucosa	stomach
50	chr1:94930800-94941600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links