Variant report

Variant	rs539127331
Chromosome Location	chr11:121593818-121593819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518668	chr11:121593385-121604656	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121592600-121594000	Active TSS	Fetal Brain Female	brain
2	chr11:121592600-121594200	Active TSS	Brain Germinal Matrix	brain
3	chr11:121592800-121594000	Active TSS	Brain Hippocampus Middle	brain
4	chr11:121592800-121594200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:121592800-121594200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:121592800-121594200	Active TSS	Brain Anterior Caudate	brain
7	chr11:121592800-121594200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr11:121592800-121594200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
9	chr11:121592800-121594400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr11:121592800-121594400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:121592800-121594400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:121592800-121594400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr11:121592800-121594400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:121592800-121594400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:121592800-121594400	Active TSS	Brain Angular Gyrus	brain
16	chr11:121592800-121594400	Active TSS	Brain Cingulate Gyrus	brain
17	chr11:121592800-121594400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:121592800-121594600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr11:121592800-121594600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:121592800-121594600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:121592800-121594600	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr11:121592800-121594800	Active TSS	Brain Substantia Nigra	brain
23	chr11:121593000-121594000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr11:121593000-121594000	Active TSS	Rectal Smooth Muscle	rectum
25	chr11:121593000-121594200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:121593000-121594200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:121593000-121594200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:121593000-121594200	Active TSS	Fetal Kidney	kidney
29	chr11:121593000-121594200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr11:121593000-121594200	Active TSS	Right Atrium	heart
31	chr11:121593000-121594400	Active TSS	H9 Cell Line	embryonic stem cell
32	chr11:121593000-121594400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:121593000-121594400	Active TSS	Aorta	Aorta
34	chr11:121593000-121594400	Enhancers	Esophagus	oesophagus
35	chr11:121593000-121594400	Flanking Active TSS	Fetal Muscle Leg	muscle
36	chr11:121593000-121594400	Active TSS	Ovary	ovary
37	chr11:121593000-121594600	Active TSS	Colon Smooth Muscle	Colon
38	chr11:121593000-121594600	Active TSS	Osteobl	bone
39	chr11:121593200-121594000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:121593200-121594000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr11:121593200-121594000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
42	chr11:121593200-121594200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr11:121593200-121594200	Weak transcription	Fetal Heart	heart
44	chr11:121593200-121594200	Active TSS	Fetal Lung	lung
45	chr11:121593200-121594200	Active TSS	HSMMtube	muscle
46	chr11:121593200-121594200	Active TSS	NH-A	brain
47	chr11:121593200-121594400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:121593200-121594400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:121593200-121594400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:121593200-121594400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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