Variant report

Variant	rs539137860
Chromosome Location	chr6:33930089-33930090
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33928944..33932796-chr6:33933214..33936694,5	K562	blood:
2	chr6:33928847..33930667-chr6:33930699..33932351,2	K562	blood:
3	chr6:33928175..33930963-chr6:33993122..33995355,2	MCF-7	breast:
4	chr6:33925599..33928278-chr6:33928837..33930807,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv602842	chr6:33927311-33942228	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv527079	chr6:33927311-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv437504	chr6:33928390-33944014	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv437505	chr6:33928390-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv998264	chr6:33928881-33934613	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33926000-33931400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:33926000-33931600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:33926400-33931000	Enhancers	NHEK	skin
4	chr6:33927000-33942400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33927600-33931000	Enhancers	HMEC	breast
6	chr6:33929400-33931200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:33929600-33930600	Enhancers	NHDF-Ad	bronchial
8	chr6:33929600-33931000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:33929600-33931000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:33929600-33931000	Enhancers	Fetal Stomach	stomach
11	chr6:33929600-33931200	Enhancers	Brain Germinal Matrix	brain
12	chr6:33929800-33930400	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:33929800-33930600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:33929800-33930600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr6:33929800-33930600	Enhancers	Fetal Lung	lung
16	chr6:33930000-33930200	Enhancers	Fetal Brain Female	brain
17	chr6:33930000-33930400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:33930000-33930400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:33930000-33930600	Enhancers	Colon Smooth Muscle	Colon
20	chr6:33930000-33931000	Enhancers	HUES6 Cell Line	embryonic stem cell

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