Variant report

Variant	rs539164585
Chromosome Location	chr8:108506455-108506456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3480583	chr8:108504234-108506607	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv819326	chr8:108504700-108506635	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv611861	chr8:108504907-108509116	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv611862	chr8:108504907-108513341	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1845767	chr8:108504907-108515373	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1849422	chr8:108504907-108515373	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1825455	chr8:108504907-108518274	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv611866	chr8:108504961-108509116	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv611869	chr8:108505161-108509116	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108497800-108508400	Weak transcription	Left Ventricle	heart
2	chr8:108498200-108506800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:108498400-108506800	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:108498400-108507400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:108499000-108506600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:108499400-108507000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:108499600-108506800	Weak transcription	Fetal Thymus	thymus
8	chr8:108499800-108506800	Weak transcription	Aorta	Aorta
9	chr8:108500400-108507200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:108502400-108507600	Weak transcription	Psoas Muscle	Psoas
11	chr8:108502600-108506800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:108502800-108506600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:108502800-108506600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:108502800-108506600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:108502800-108506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:108502800-108506600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:108502800-108506600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:108502800-108506600	Weak transcription	Brain Germinal Matrix	brain
19	chr8:108502800-108506600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:108502800-108506800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:108502800-108506800	Weak transcription	Fetal Brain Female	brain
22	chr8:108502800-108507000	Weak transcription	Ovary	ovary
23	chr8:108502800-108507200	Weak transcription	A549	lung
24	chr8:108502800-108507600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:108502800-108509200	Weak transcription	NHEK	skin
26	chr8:108503000-108506600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:108503000-108506600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:108503000-108506600	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:108503000-108506800	Weak transcription	Adipose Nuclei	Adipose
30	chr8:108503000-108507400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:108503000-108508400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:108503800-108506800	Weak transcription	Brain Anterior Caudate	brain
33	chr8:108503800-108506800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr8:108504000-108506600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:108504000-108506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:108504000-108506600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:108505000-108508800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:108505200-108506800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr8:108505200-108507000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr8:108505200-108507400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:108505200-108507800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:108505200-108508000	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr8:108505400-108506600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:108505400-108506800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr8:108505400-108507000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr8:108505400-108508400	Enhancers	Primary T cells from cord blood	blood
47	chr8:108505400-108509200	Enhancers	Dnd41	blood
48	chr8:108506000-108507400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr8:108506200-108506600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:108506200-108506600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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