Variant report

Variant	rs539167352
Chromosome Location	chr11:10227451-10227452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10227014..10228870-chr11:10386230..10387904,2	K562	blood:
2	chr11:10226516..10229103-chr11:10229118..10231466,3	MCF-7	breast:
3	chr11:10225918..10228486-chr11:10324033..10325945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv515552	chr11:10226268-10228809	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
2	chr11:10208800-10229400	Weak transcription	NHLF	lung
3	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:10223800-10229600	Weak transcription	Osteobl	bone
5	chr11:10225600-10228400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:10226400-10227800	Enhancers	Left Ventricle	heart
7	chr11:10226800-10227600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:10226800-10230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:10227000-10227600	Enhancers	Right Atrium	heart
10	chr11:10227000-10227800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:10227000-10227800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:10227000-10227800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:10227000-10227800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:10227000-10230200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:10227000-10230200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:10227000-10230400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:10227200-10227600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:10227200-10227600	Enhancers	Right Ventricle	heart
19	chr11:10227200-10227800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:10227200-10227800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:10227200-10227800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr11:10227200-10227800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:10227200-10227800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:10227200-10227800	Enhancers	Esophagus	oesophagus
25	chr11:10227200-10227800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:10227200-10228000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:10227200-10228000	Enhancers	NHDF-Ad	bronchial
28	chr11:10227200-10228200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr11:10227200-10229000	Weak transcription	Ovary	ovary
30	chr11:10227200-10229200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:10227200-10230200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:10227400-10227600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:10227400-10227600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:10227400-10227800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:10227400-10227800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:10227400-10227800	Enhancers	HepG2	liver
37	chr11:10227400-10228400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr11:10227400-10235600	Weak transcription	Psoas Muscle	Psoas
39	chr11:10227400-10240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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