Variant report

Variant	rs539167899
Chromosome Location	chr6:71889305-71889306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887200-71891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:71888600-71889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:71888800-71889800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:71888800-71889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:71889000-71889600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:71889200-71889600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:71889200-71890000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:71889200-71890200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:71889200-71892200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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