Variant report

Variant	rs539174303
Chromosome Location	chr13:95197803-95197804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3519385	chr13:95196826-95201400	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3519397	chr13:95196826-95201400	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv20033	chr13:95196987-95201267	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv562757	chr13:95197273-95201200	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv562758	chr13:95197434-95201200	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv562759	chr13:95197666-95201200	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95188600-95200000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:95188800-95200200	Weak transcription	Primary T cells from cord blood	blood
3	chr13:95195400-95198800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr13:95195600-95200400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:95195800-95198600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:95195800-95200200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:95196400-95200800	Weak transcription	Pancreas	Pancrea
8	chr13:95196600-95200400	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:95196800-95200600	Weak transcription	Fetal Stomach	stomach
10	chr13:95197000-95199600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:95197200-95198000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:95197200-95198200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:95197200-95200800	Weak transcription	Right Atrium	heart
14	chr13:95197400-95198600	Weak transcription	Thymus	Thymus
15	chr13:95197600-95199400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:95197600-95200400	Weak transcription	Brain Anterior Caudate	brain
17	chr13:95197800-95198200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr13:95197800-95199000	Enhancers	Fetal Intestine Large	intestine
19	chr13:95197800-95199000	Enhancers	Fetal Intestine Small	intestine
20	chr13:95197800-95199200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr13:95197800-95199200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:95197800-95199200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr13:95197800-95199400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr13:95197800-95200800	Enhancers	H1 Cell Line	embryonic stem cell

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