Variant report

Variant	rs539177303
Chromosome Location	chr5:74246951-74246952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74245711..74248702-chr5:74259908..74262070,2	MCF-7	breast:
2	chr5:74245978..74248569-chr5:74531357..74534080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145700	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74241600-74248000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:74243600-74247400	Enhancers	Osteobl	bone
3	chr5:74244200-74253400	Weak transcription	Aorta	Aorta
4	chr5:74244400-74247400	Weak transcription	Small Intestine	intestine
5	chr5:74244400-74249400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:74244400-74249800	Weak transcription	Ovary	ovary
7	chr5:74244400-74249800	Weak transcription	HSMM	muscle
8	chr5:74244600-74247800	Weak transcription	Pancreas	Pancrea
9	chr5:74244600-74248400	Weak transcription	Placenta	Placenta
10	chr5:74244600-74249800	Weak transcription	Gastric	stomach
11	chr5:74244600-74249800	Weak transcription	Spleen	Spleen
12	chr5:74244600-74250000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:74244600-74251600	Enhancers	NHLF	lung
14	chr5:74244800-74247800	Weak transcription	Fetal Stomach	stomach
15	chr5:74245200-74248400	Weak transcription	Fetal Lung	lung
16	chr5:74245400-74247000	Enhancers	NH-A	brain
17	chr5:74245400-74256000	Enhancers	Fetal Intestine Large	intestine
18	chr5:74245600-74249600	Weak transcription	Liver	Liver
19	chr5:74245800-74249000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:74245800-74249400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:74245800-74255800	Enhancers	Stomach Mucosa	stomach
22	chr5:74246000-74247000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:74246000-74247600	Weak transcription	Fetal Kidney	kidney
24	chr5:74246000-74249600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:74246000-74249800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr5:74246200-74247000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:74246200-74248600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:74246200-74249800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:74246200-74251600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:74246200-74259200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:74246400-74249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:74246400-74249800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:74246400-74252000	Enhancers	NHDF-Ad	bronchial
34	chr5:74246600-74255000	Enhancers	HepG2	liver
35	chr5:74246600-74256600	Enhancers	Fetal Intestine Small	intestine

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