Variant report

Variant	rs539218166
Chromosome Location	chr6:56730064-56730065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56726286..56729119-chr6:56729880..56733046,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56717400-56730200	Weak transcription	Ovary	ovary
2	chr6:56717800-56730400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:56718200-56731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:56721800-56731200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:56723000-56732600	Weak transcription	Small Intestine	intestine
6	chr6:56724200-56733800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:56724600-56730400	Enhancers	Fetal Intestine Small	intestine
8	chr6:56725000-56730400	Enhancers	HUVEC	blood vessel
9	chr6:56725600-56730200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:56725600-56731000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:56725600-56731200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:56725600-56734800	Enhancers	Hela-S3	cervix
13	chr6:56725800-56730400	Enhancers	Fetal Intestine Large	intestine
14	chr6:56727200-56734600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:56727400-56730600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:56727400-56730600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:56727600-56730600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:56727600-56730600	Enhancers	NHEK	skin
19	chr6:56727600-56734400	Enhancers	HMEC	breast
20	chr6:56727800-56734800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:56728000-56730200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:56728000-56731800	Weak transcription	Spleen	Spleen
23	chr6:56728000-56734800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:56728000-56735000	Enhancers	HSMM	muscle
25	chr6:56728000-56735000	Enhancers	NHDF-Ad	bronchial
26	chr6:56728200-56730800	Enhancers	NHLF	lung
27	chr6:56728200-56733800	Enhancers	HSMMtube	muscle
28	chr6:56728200-56733800	Enhancers	Osteobl	bone
29	chr6:56728400-56730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:56728800-56734800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:56729000-56730200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr6:56729000-56730400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:56729000-56733000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:56729200-56731800	Weak transcription	GM12878-XiMat	blood
35	chr6:56729200-56733000	Enhancers	A549	lung
36	chr6:56729400-56731600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:56729400-56731800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:56729400-56731800	Weak transcription	NH-A	brain
39	chr6:56729600-56732200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr6:56729800-56730200	Enhancers	Colonic Mucosa	Colon
41	chr6:56729800-56730400	Enhancers	Right Atrium	heart
42	chr6:56730000-56730400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:56730000-56731000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:56730000-56731200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:56730000-56732000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:56730000-56732000	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr6:56730000-56732200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:56730000-56733000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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