Variant report

Variant	rs539221286
Chromosome Location	chr18:29225896-29225897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29219249..29221553-chr18:29225572..29227383,2	MCF-7	breast:
2	chr18:29225539..29227273-chr18:29351127..29353466,2	K562	blood:
3	chr18:29219456..29221928-chr18:29224647..29227313,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1831348	chr18:29205526-29268786	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:29202800-29235000	Weak transcription	Pancreas	Pancrea
3	chr18:29202800-29240200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:29203800-29226000	Weak transcription	Fetal Lung	lung
5	chr18:29203800-29227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:29204000-29228400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:29204400-29228400	Weak transcription	Psoas Muscle	Psoas
8	chr18:29204600-29238600	Weak transcription	Gastric	stomach
9	chr18:29205000-29227400	Weak transcription	A549	lung
10	chr18:29208000-29227400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:29208400-29227000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr18:29208400-29229000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr18:29209000-29226000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr18:29209000-29228400	Weak transcription	Brain Angular Gyrus	brain
15	chr18:29211000-29227400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr18:29211200-29226000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr18:29211200-29227400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:29213800-29229000	Weak transcription	HUVEC	blood vessel
19	chr18:29214400-29226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:29214800-29228800	Weak transcription	NH-A	brain
21	chr18:29216000-29229000	Weak transcription	Placenta	Placenta
22	chr18:29218800-29232200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr18:29219200-29226600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr18:29219200-29227400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:29219200-29240000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:29219200-29252000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr18:29219200-29252000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr18:29220200-29227600	Weak transcription	Small Intestine	intestine
29	chr18:29222000-29226000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr18:29223200-29236400	Weak transcription	Esophagus	oesophagus
31	chr18:29223600-29228400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr18:29223600-29228800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr18:29223800-29228800	Weak transcription	Osteobl	bone
34	chr18:29224000-29226200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr18:29224000-29226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr18:29224000-29226400	Weak transcription	HMEC	breast
37	chr18:29224000-29228400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr18:29224000-29228400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr18:29224400-29228400	Weak transcription	NHEK	skin
40	chr18:29224600-29230800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr18:29224800-29226200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr18:29224800-29227000	Enhancers	Brain Anterior Caudate	brain
43	chr18:29224800-29228600	Enhancers	Brain Germinal Matrix	brain
44	chr18:29224800-29229200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr18:29224800-29232400	Enhancers	Primary hematopoietic stem cells	blood
46	chr18:29225000-29226400	Weak transcription	Fetal Intestine Large	intestine
47	chr18:29225000-29226600	Weak transcription	Fetal Muscle Leg	muscle
48	chr18:29225000-29229000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr18:29225200-29226000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr18:29225200-29226200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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