Variant report

Variant	rs539222969
Chromosome Location	chr1:221805425-221805426
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv13406	chr1:221803907-221805874	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3321212	chr1:221804793-221805993	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3321211	chr1:221804823-221805987	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3321210	chr1:221804864-221805923	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3321213	chr1:221804937-221805882	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221803800-221806000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:221804200-221805600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:221804400-221806200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:221804600-221806400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:221804600-221806400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:221804600-221806600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:221804800-221806000	Enhancers	Fetal Heart	heart
8	chr1:221804800-221807600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:221804800-221807600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:221805200-221805800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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