Variant report

Variant	rs539243878
Chromosome Location	chr22:29605296-29605297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29603086..29606057-chr22:29664265..29665857,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182944	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv914958	chr22:29586058-29620599	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809952	chr22:29595349-29661434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv1806500	chr22:29604787-29635071	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29602200-29605800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr22:29602400-29605800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:29602400-29606200	Flanking Active TSS	Fetal Brain Female	brain
4	chr22:29602800-29605600	Enhancers	Brain Substantia Nigra	brain
5	chr22:29602800-29611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:29602800-29616000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr22:29602800-29616000	Weak transcription	Ovary	ovary
8	chr22:29603000-29606000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr22:29603000-29606000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
10	chr22:29603000-29610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:29603200-29605800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:29603200-29605800	Genic enhancers	Fetal Stomach	stomach
13	chr22:29603400-29605400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr22:29603400-29606000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:29603400-29606000	Enhancers	Fetal Lung	lung
16	chr22:29603400-29608800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr22:29603400-29611000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr22:29603600-29606000	Transcr. at gene 5' and 3'	Dnd41	blood
19	chr22:29603600-29606800	Weak transcription	Fetal Kidney	kidney
20	chr22:29603800-29605800	Flanking Active TSS	GM12878-XiMat	blood
21	chr22:29603800-29612600	Weak transcription	Brain Angular Gyrus	brain
22	chr22:29604000-29605800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr22:29604000-29606000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr22:29604000-29606200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr22:29604000-29606200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
26	chr22:29604000-29616200	Weak transcription	Thymus	Thymus
27	chr22:29604200-29605600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr22:29604200-29605600	Enhancers	Brain Hippocampus Middle	brain
29	chr22:29604200-29605600	Enhancers	Duodenum Mucosa	Duodenum
30	chr22:29604200-29605800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr22:29604400-29605400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr22:29604600-29605400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr22:29604600-29605400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr22:29604600-29605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:29604600-29605600	Bivalent Enhancer	Primary B cells from cord blood	blood
36	chr22:29604600-29606000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr22:29604600-29606000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr22:29604600-29608400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr22:29604800-29605400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr22:29604800-29605600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr22:29604800-29605600	Enhancers	Fetal Heart	heart
42	chr22:29604800-29605800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr22:29604800-29605800	Enhancers	Brain Anterior Caudate	brain
44	chr22:29604800-29606000	Enhancers	Placenta	Placenta
45	chr22:29604800-29606200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr22:29604800-29612600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr22:29605000-29605400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr22:29605000-29605400	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr22:29605000-29606000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr22:29605000-29606800	Weak transcription	Pancreas	Pancrea

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