The 2.0 version of rSNPBase

Variant report

Variant rs539252681
Chromosome Location chr3:105550966-105550967
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:105483200-105555200 Weak transcription Placenta Placenta
2 chr3:105511400-105566400 Weak transcription Aorta Aorta
3 chr3:105528400-105553600 Weak transcription Fetal Kidney kidney
4 chr3:105532200-105563000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr3:105533600-105560600 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:105533800-105570000 Weak transcription Dnd41 blood
7 chr3:105534200-105566200 Weak transcription Brain Germinal Matrix brain
8 chr3:105535600-105553800 Weak transcription Fetal Brain Male brain
9 chr3:105539400-105551600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr3:105540800-105569600 Weak transcription Fetal Thymus thymus
11 chr3:105541000-105554400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr3:105541800-105553600 Weak transcription Fetal Brain Female brain
13 chr3:105542200-105553600 Weak transcription Liver Liver
14 chr3:105542200-105554000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr3:105542600-105555400 Weak transcription Brain Angular Gyrus brain
16 chr3:105542600-105566000 Weak transcription Fetal Stomach stomach
17 chr3:105542800-105554400 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr3:105543000-105555600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr3:105543200-105551600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr3:105543400-105555800 Weak transcription HepG2 liver
21 chr3:105543400-105560800 Weak transcription Fetal Muscle Trunk muscle
22 chr3:105543400-105581200 Weak transcription Gastric stomach
23 chr3:105543600-105551000 Weak transcription Primary hematopoietic stem cells blood
24 chr3:105543600-105557200 Weak transcription Fetal Intestine Large intestine
25 chr3:105543800-105551400 Weak transcription HSMMtube muscle
26 chr3:105543800-105571000 Weak transcription Lung lung
27 chr3:105544000-105554400 Weak transcription Fetal Lung lung
28 chr3:105544200-105554400 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr3:105544200-105559200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr3:105544200-105584600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr3:105545400-105553000 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr3:105545800-105551800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
33 chr3:105546000-105552400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
34 chr3:105546200-105552200 Enhancers Primary T killer naive cells fromperipheralblood blood
35 chr3:105546400-105552200 Enhancers Primary T helper cells fromperipheralblood blood
36 chr3:105546600-105551200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr3:105546600-105586200 Weak transcription Esophagus oesophagus
38 chr3:105546800-105553800 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr3:105546800-105560800 Weak transcription Fetal Muscle Leg muscle
40 chr3:105547000-105551000 Weak transcription Brain Hippocampus Middle brain
41 chr3:105547200-105551400 Weak transcription Fetal Heart heart
42 chr3:105547200-105551600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr3:105547200-105553600 Weak transcription Hela-S3 cervix
44 chr3:105547200-105554600 Weak transcription Duodenum Mucosa Duodenum
45 chr3:105547200-105554800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr3:105547200-105554800 Weak transcription Ovary ovary
47 chr3:105547200-105555000 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr3:105547200-105557400 Weak transcription Fetal Intestine Small intestine
49 chr3:105547400-105554400 Weak transcription NH-A brain
50 chr3:105547400-105557200 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015