Variant report

Variant	rs539271641
Chromosome Location	chr6:44157171-44157172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44156041..44157971-chr6:44162040..44164180,2	K562	blood:
2	chr6:44155967..44159125-chr6:44162040..44163972,4	K562	blood:
3	chr6:44101553..44104019-chr6:44156521..44158931,2	MCF-7	breast:
4	chr6:44152329..44155208-chr6:44155507..44158419,2	K562	blood:
5	chr6:44152776..44155726-chr6:44156919..44159966,5	K562	blood:

Variant related genes	Relation type
ENSG00000137216	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv526408	chr6:44156470-44163624	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44153000-44160200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:44154000-44163800	Weak transcription	Thymus	Thymus
3	chr6:44154200-44160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:44154200-44160200	Weak transcription	Lung	lung
5	chr6:44154400-44157200	Weak transcription	GM12878-XiMat	blood
6	chr6:44154400-44158400	Enhancers	HepG2	liver
7	chr6:44154400-44159800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:44154400-44160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:44154400-44160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:44154400-44160000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:44154400-44160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:44154400-44160000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:44154400-44160200	Weak transcription	Left Ventricle	heart
14	chr6:44154400-44160200	Weak transcription	Right Atrium	heart
15	chr6:44154400-44160200	Weak transcription	Spleen	Spleen
16	chr6:44154400-44160400	Weak transcription	Fetal Heart	heart
17	chr6:44154400-44168400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:44154600-44157200	Weak transcription	Fetal Thymus	thymus
19	chr6:44154600-44159800	Weak transcription	K562	blood
20	chr6:44154600-44160000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:44154600-44160000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:44154600-44160000	Weak transcription	Stomach Mucosa	stomach
23	chr6:44155000-44160200	Weak transcription	Adipose Nuclei	Adipose
24	chr6:44155200-44159800	Weak transcription	HUVEC	blood vessel
25	chr6:44155200-44160200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:44155200-44160200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:44156200-44157800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:44157000-44157200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:44157000-44157200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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