Variant report

Variant	rs539285210
Chromosome Location	chr14:70721742-70721743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70716825..70718477-chr14:70720427..70722449,2	MCF-7	breast:
2	chr14:70519745..70521992-chr14:70721079..70723653,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3402532	chr14:70721349-70722397	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721000-70722000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:70721000-70722200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr14:70721000-70722200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:70721000-70722200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr14:70721000-70722200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
6	chr14:70721000-70722200	Active TSS	HepG2	liver
7	chr14:70721000-70722600	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr14:70721000-70722800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr14:70721000-70722800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
10	chr14:70721000-70724000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr14:70721200-70721800	Active TSS	Pancreas	Pancrea
12	chr14:70721200-70721800	Active TSS	Right Atrium	heart
13	chr14:70721200-70721800	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr14:70721200-70722000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:70721200-70722000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:70721200-70722000	Active TSS	Primary hematopoietic stem cells	blood
17	chr14:70721200-70722000	Bivalent/Poised TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr14:70721200-70722000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
19	chr14:70721200-70722000	Active TSS	Colonic Mucosa	Colon
20	chr14:70721200-70722000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
21	chr14:70721200-70722000	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr14:70721200-70722000	Active TSS	Placenta	Placenta
23	chr14:70721200-70722000	Active TSS	Gastric	stomach
24	chr14:70721200-70722000	Enhancers	Lung	lung
25	chr14:70721200-70722000	Active TSS	Ovary	ovary
26	chr14:70721200-70722000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
27	chr14:70721200-70722200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:70721200-70722200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:70721200-70722200	Active TSS	Liver	Liver
30	chr14:70721200-70722200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
31	chr14:70721200-70722200	Active TSS	Psoas Muscle	Psoas
32	chr14:70721200-70722200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
33	chr14:70721200-70722200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
34	chr14:70721200-70722200	Active TSS	A549	lung
35	chr14:70721200-70722400	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr14:70721200-70722600	Active TSS	H9 Cell Line	embryonic stem cell
37	chr14:70721200-70722600	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr14:70721200-70722600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:70721200-70722800	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr14:70721200-70722800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr14:70721400-70721800	Bivalent/Poised TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:70721400-70721800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
43	chr14:70721400-70721800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
44	chr14:70721400-70721800	Active TSS	Rectal Smooth Muscle	rectum
45	chr14:70721400-70721800	Active TSS	Right Ventricle	heart
46	chr14:70721400-70722000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:70721400-70722000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:70721400-70722000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:70721400-70722000	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
50	chr14:70721400-70722000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain

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