Variant report

Variant	rs539322058
Chromosome Location	chr19:39758866-39758867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:39758818-39759016	GM20000	blood:	n/a	chr19:39758932-39758941
2	CTCF	chr19:39758794-39759035	GM12891	blood:	n/a	chr19:39758932-39758941
3	CTCF	chr19:39758821-39758990	ProgFib	skin:	n/a	chr19:39758932-39758941
4	CTCF	chr19:39758799-39759039	MCF-7	breast:	n/a	chr19:39758932-39758941
5	CTCF	chr19:39758785-39759093	GM12878	blood:	n/a	chr19:39758932-39758941
6	CTCF	chr19:39758866-39758957	Fibrobl	skin:	n/a	chr19:39758932-39758941
7	CTCF	chr19:39758817-39759031	HepG2	liver:	n/a	chr19:39758932-39758941
8	CTCF	chr19:39758799-39759049	MCF-7	breast:	n/a	chr19:39758932-39758941
9	CTCF	chr19:39758822-39759015	GM10266	blood:	n/a	chr19:39758932-39758941
10	CTCF	chr19:39758683-39759152	K562	blood:	n/a	chr19:39758932-39758941
11	CTCF	chr19:39758806-39759027	Gliobla	brain:	n/a	chr19:39758932-39758941
12	CTCF	chr19:39758844-39759002	GM13976	blood:	n/a	chr19:39758932-39758941
13	CTCF	chr19:39758840-39759079	LNCaP	prostate:	n/a	chr19:39758932-39758941
14	CTCF	chr19:39758775-39759091	MCF-7	breast:	n/a	chr19:39758932-39758941
15	CTCF	chr19:39758826-39759025	NHEK	skin:	n/a	chr19:39758932-39758941
16	CTCF	chr19:39758802-39759045	GM19239	blood:	n/a	chr19:39758932-39758941
17	CTCF	chr19:39758649-39759152	A549	lung:	n/a	chr19:39758932-39758941
18	CTCF	chr19:39758813-39759080	A549	lung:	n/a	chr19:39758932-39758941
19	POLR2A	chr19:39758813-39758912	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr19:39758842-39759015	HUVEC	blood vessel:	n/a	chr19:39758932-39758941
21	TCF12	chr19:39758803-39758996	GM12878	blood:	n/a	chr19:39758873-39758883
22	CTCF	chr19:39758778-39759039	H1-hESC	embryonic stem cell:	n/a	chr19:39758932-39758941
23	CTCF	chr19:39758829-39759049	Pancreas_OC	pancreas:	n/a	chr19:39758932-39758941
24	CTCF	chr19:39758787-39759069	MCF-7	breast:	n/a	chr19:39758932-39758941
25	CTCF	chr19:39758847-39759010	Medullo	brain:	n/a	chr19:39758932-39758941
26	CTCF	chr19:39758842-39759104	A549	lung:	n/a	chr19:39758932-39758941
27	CTCF	chr19:39758793-39759064	K562	blood:	n/a	chr19:39758932-39758941
28	CTCF	chr19:39758782-39759066	GM12892	blood:	n/a	chr19:39758932-39758941
29	CTCF	chr19:39758793-39759062	GM19238	blood:	n/a	chr19:39758932-39758941
30	CTCF	chr19:39758779-39759078	K562	blood:	n/a	chr19:39758932-39758941
31	CTCF	chr19:39758822-39759068	GM13977	blood:	n/a	chr19:39758932-39758941
32	CTCF	chr19:39758811-39759043	Hela-S3	cervix:	n/a	chr19:39758932-39758941
33	CTCF	chr19:39758770-39759111	K562	blood:	n/a	chr19:39758932-39758941
34	CTCF	chr19:39758704-39759134	A549	lung:	n/a	chr19:39758932-39758941
35	CTCF	chr19:39758793-39759041	MCF-7	breast:	n/a	chr19:39758932-39758941
36	CTCF	chr19:39758832-39759015	GM10248	blood:	n/a	chr19:39758932-39758941
37	CTCF	chr19:39758859-39759058	Spleen_OC	spleen:	n/a	chr19:39758932-39758941
38	CTCF	chr19:39758815-39759030	A549	lung:	n/a	chr19:39758932-39758941
39	EBF1	chr19:39758662-39758960	GM12878	blood:	n/a	n/a
40	CTCF	chr19:39758807-39759051	GM19240	blood:	n/a	chr19:39758932-39758941

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39751549..39753214-chr19:39756259..39759130,2	K562	blood:

Variant related genes	Relation type
IFNL2	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833830	chr19:39709538-39837846	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv911678	chr19:39710903-39763765	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv911679	chr19:39735106-39924129	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
5	nsv1058514	chr19:39744112-39902580	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
6	nsv978814	chr19:39756976-39760724	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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