Variant report

Variant	rs539326549
Chromosome Location	chr19:44530574-44530575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44529555..44531861-chr19:44550598..44553119,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv961226	chr19:44530539-44531310	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44528800-44530600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:44528800-44530600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr19:44528800-44530600	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr19:44528800-44530600	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr19:44528800-44530600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr19:44528800-44530600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr19:44528800-44530600	Active TSS	Brain Angular Gyrus	brain
8	chr19:44528800-44530600	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr19:44529000-44530600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:44529000-44530600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:44529000-44530600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr19:44529200-44530600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr19:44529200-44530600	Active TSS	Muscle Satellite Cultured Cells	--
14	chr19:44529200-44530600	Active TSS	A549	lung
15	chr19:44529400-44530600	Active TSS	H1 Cell Line	embryonic stem cell
16	chr19:44529400-44530600	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr19:44529400-44530600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:44529400-44530600	Active TSS	Duodenum Mucosa	Duodenum
19	chr19:44529400-44530600	Active TSS	GM12878-XiMat	blood
20	chr19:44529400-44530600	Active TSS	HMEC	breast
21	chr19:44529600-44530600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr19:44529800-44530600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr19:44529800-44530600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr19:44529800-44530600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:44529800-44530600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr19:44529800-44530600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr19:44529800-44530600	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr19:44529800-44530600	Flanking Active TSS	Liver	Liver
29	chr19:44529800-44530600	Flanking Active TSS	Fetal Brain Male	brain
30	chr19:44529800-44530600	Flanking Active TSS	Fetal Brain Female	brain
31	chr19:44529800-44530600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr19:44529800-44530600	Flanking Active TSS	Thymus	Thymus
33	chr19:44529800-44530600	Flanking Active TSS	HUVEC	blood vessel
34	chr19:44529800-44530600	Flanking Active TSS	NH-A	brain
35	chr19:44530000-44530600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr19:44530000-44530600	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr19:44530000-44530600	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr19:44530000-44530600	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr19:44530000-44530600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr19:44530000-44530600	Enhancers	Stomach Mucosa	stomach
41	chr19:44530000-44530600	Flanking Active TSS	Dnd41	blood
42	chr19:44530000-44530600	Flanking Active TSS	NHEK	skin
43	chr19:44530000-44530600	Flanking Active TSS	Osteobl	bone
44	chr19:44530200-44530600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr19:44530200-44530600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr19:44530200-44530600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:44530200-44530600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr19:44530200-44530600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr19:44530200-44530600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr19:44530200-44530600	Enhancers	Primary B cells from peripheral blood	blood

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