Variant report

Variant	rs539344976
Chromosome Location	chr3:140777603-140777604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140763223..140765937-chr3:140775586..140778392,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3464316	chr3:140776527-140779000	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3464317	chr3:140776527-140779000	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv591890	chr3:140776991-140778138	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv17263	chr3:140777010-140778650	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140772000-140779000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:140772000-140782600	Weak transcription	Psoas Muscle	Psoas
3	chr3:140772200-140779000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:140774600-140777800	Enhancers	Right Ventricle	heart
5	chr3:140775200-140779000	Weak transcription	Fetal Lung	lung
6	chr3:140775800-140784200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:140776000-140777800	Weak transcription	Fetal Stomach	stomach
8	chr3:140776000-140779600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:140776000-140783400	Weak transcription	Right Atrium	heart
10	chr3:140776000-140787600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:140776400-140779000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:140776600-140779200	Enhancers	Pancreas	Pancrea
13	chr3:140776600-140787200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:140777200-140778000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:140777200-140781200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:140777400-140777800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:140777400-140778000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:140777400-140778000	ZNF genes & repeats	Dnd41	blood
19	chr3:140777400-140778400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:140777400-140779000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:140777400-140782600	Weak transcription	Fetal Kidney	kidney
22	chr3:140777400-140795000	Weak transcription	Fetal Brain Female	brain
23	chr3:140777600-140777800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:140777600-140778000	Strong transcription	Fetal Muscle Leg	muscle
25	chr3:140777600-140778600	Weak transcription	Fetal Heart	heart
26	chr3:140777600-140782800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:140777600-140785200	Weak transcription	Brain Germinal Matrix	brain
28	chr3:140777600-140789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links