Variant report

Variant rs539345495
Chromosome Location chr21:47548231-47548232
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:47530800-47563600 Weak transcription Right Atrium heart
2 chr21:47531000-47548800 Strong transcription Duodenum Smooth Muscle Duodenum
3 chr21:47531800-47549400 Strong transcription Aorta Aorta
4 chr21:47531800-47549600 Strong transcription Colon Smooth Muscle Colon
5 chr21:47531800-47550000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
6 chr21:47532000-47549400 Strong transcription Colonic Mucosa Colon
7 chr21:47535000-47554800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr21:47535200-47549400 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr21:47535200-47549600 Strong transcription Adipose Nuclei Adipose
10 chr21:47535200-47551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr21:47535200-47552000 Strong transcription Breast Myoepithelial Primary Cells Breast
12 chr21:47535200-47552000 Strong transcription NHLF lung
13 chr21:47535200-47552400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr21:47535200-47552800 Strong transcription Fetal Muscle Leg muscle
15 chr21:47535600-47549200 Weak transcription Fetal Brain Female brain
16 chr21:47535600-47551000 Strong transcription Fetal Intestine Small intestine
17 chr21:47538200-47563600 Weak transcription Brain Anterior Caudate brain
18 chr21:47539200-47549800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr21:47539200-47550400 Weak transcription Duodenum Mucosa Duodenum
20 chr21:47542400-47552000 Weak transcription HSMM muscle
21 chr21:47542600-47551200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr21:47542600-47551400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr21:47542600-47552400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr21:47542800-47550200 Strong transcription Muscle Satellite Cultured Cells --
25 chr21:47542800-47550600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr21:47542800-47552400 Strong transcription NHDF-Ad bronchial
27 chr21:47543600-47553800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr21:47544000-47548600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
29 chr21:47544000-47553400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
30 chr21:47544200-47553800 Strong transcription Osteobl bone
31 chr21:47544400-47548400 Genic enhancers Placenta Placenta
32 chr21:47544400-47550000 Strong transcription Placenta Amnion Placenta Amnion
33 chr21:47544600-47549600 Strong transcription iPS-15b Cell Line embryonic stem cell
34 chr21:47544800-47549200 Strong transcription Lung lung
35 chr21:47545000-47549000 Strong transcription Spleen Spleen
36 chr21:47545000-47556200 Weak transcription HSMMtube muscle
37 chr21:47546000-47550800 Enhancers Fetal Heart heart
38 chr21:47546200-47556200 Weak transcription Fetal Lung lung
39 chr21:47546400-47551400 Weak transcription Rectal Smooth Muscle rectum
40 chr21:47546400-47552000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr21:47546800-47548600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr21:47546800-47552000 Weak transcription Esophagus oesophagus
43 chr21:47547000-47548800 Genic enhancers Stomach Smooth Muscle stomach
44 chr21:47547000-47549000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
45 chr21:47547200-47549800 Genic enhancers Right Ventricle heart
46 chr21:47547400-47548600 Strong transcription Fetal Intestine Large intestine
47 chr21:47547400-47549000 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr21:47547600-47548800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr21:47547600-47549200 Strong transcription NH-A brain
50 chr21:47547600-47549600 Enhancers Left Ventricle heart

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