Variant report

Variant	rs539366409
Chromosome Location	chr15:82945671-82945672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv510669	chr15:82600766-83011258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv33165	chr15:82664410-83041871	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv9285	chr15:82721187-83054193	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv1829503	chr15:82723361-83036588	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv428802	chr15:82879650-83107710	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
14	esv17433	chr15:82879700-83054275	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv1813164	chr15:82903624-83029649	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv977745	chr15:82912356-83068886	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv20276	chr15:82935155-82963316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
19	esv21199	chr15:82937569-83057978	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv11776	chr15:82937940-82992972	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
21	esv1812120	chr15:82942285-82967955	Enhancers Active TSS Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
22	esv3356498	chr15:82943922-82947270	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82944200-82945800	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr15:82944800-82945800	Active TSS	HUES6 Cell Line	embryonic stem cell

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