Variant report

Variant	rs539366802
Chromosome Location	chr3:133104712-133104713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133100753..133103511-chr3:133104610..133107430,2	K562	blood:
2	chr3:133103700..133105206-chr3:133145260..133147537,2	MCF-7	breast:
3	chr3:133103166..133105237-chr3:133107966..133110867,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460857	chr3:133101390-133122216	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv591801	chr3:133101390-133122216	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3360224	chr3:133103962-133107460	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133094000-133109000	Weak transcription	HSMM	muscle
2	chr3:133094800-133110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:133096000-133107800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:133099000-133117000	Weak transcription	Placenta	Placenta
5	chr3:133099600-133122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:133100800-133111600	Weak transcription	HSMMtube	muscle
7	chr3:133102400-133112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:133103400-133109000	Weak transcription	Fetal Stomach	stomach
9	chr3:133103400-133111600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:133103400-133112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:133103400-133115200	Weak transcription	Lung	lung
12	chr3:133103400-133123200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:133103400-133123600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:133103800-133105800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:133103800-133106400	Weak transcription	Fetal Thymus	thymus
16	chr3:133103800-133107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:133103800-133108600	Weak transcription	Fetal Lung	lung
18	chr3:133103800-133109000	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:133103800-133109200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:133103800-133109200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:133103800-133109400	Weak transcription	Fetal Brain Male	brain
22	chr3:133103800-133109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:133103800-133109800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:133103800-133112000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:133103800-133115800	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:133103800-133118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:133103800-133123800	Weak transcription	Brain Anterior Caudate	brain
28	chr3:133104000-133105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:133104000-133112000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:133104000-133122200	Weak transcription	Brain Substantia Nigra	brain
31	chr3:133104200-133109000	Weak transcription	Brain Germinal Matrix	brain
32	chr3:133104400-133112000	Strong transcription	Fetal Brain Female	brain
33	chr3:133104400-133131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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