Variant report

Variant	rs539372352
Chromosome Location	chr11:72652005-72652006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATG16L2-9	chr11:72651543-72652157	NONHSAT022807

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv983042	chr11:72651506-72652006	Enhancers Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72600800-72653200	Weak transcription	Lung	lung
2	chr11:72624200-72654400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:72630800-72662400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:72633000-72654400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:72633000-72680000	Weak transcription	Dnd41	blood
6	chr11:72633000-72684000	Weak transcription	Primary T cells from cord blood	blood
7	chr11:72633200-72668400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:72633400-72679400	Weak transcription	Fetal Thymus	thymus
9	chr11:72636200-72694800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:72636400-72680200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:72636400-72712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:72637000-72721600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:72637200-72653200	Weak transcription	Psoas Muscle	Psoas
14	chr11:72637400-72666000	Weak transcription	Ovary	ovary
15	chr11:72637400-72666400	Weak transcription	Right Ventricle	heart
16	chr11:72640400-72652400	Strong transcription	GM12878-XiMat	blood
17	chr11:72641200-72654400	Weak transcription	Fetal Kidney	kidney
18	chr11:72641800-72653200	Weak transcription	Pancreas	Pancrea
19	chr11:72641800-72680200	Weak transcription	HSMMtube	muscle
20	chr11:72643600-72676400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:72643800-72653000	Weak transcription	HSMM	muscle
22	chr11:72643800-72668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:72643800-72673000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:72644000-72662000	Weak transcription	Osteobl	bone
25	chr11:72644600-72662000	Weak transcription	Liver	Liver
26	chr11:72647200-72657000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:72647200-72670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:72647200-72680800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:72647400-72662200	Weak transcription	Fetal Lung	lung
30	chr11:72648400-72654000	Strong transcription	Primary B cells from cord blood	blood
31	chr11:72648800-72660200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:72648800-72661800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:72649000-72721600	Weak transcription	Thymus	Thymus
34	chr11:72649600-72681600	Weak transcription	Aorta	Aorta
35	chr11:72649800-72652400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:72649800-72657800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:72649800-72679400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:72650400-72658000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:72650400-72666600	Weak transcription	HepG2	liver
40	chr11:72650800-72654400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:72651000-72653200	Weak transcription	Spleen	Spleen
42	chr11:72651400-72662400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:72651400-72666400	Weak transcription	HUVEC	blood vessel
44	chr11:72651400-72696600	Weak transcription	Brain Anterior Caudate	brain
45	chr11:72651600-72652200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:72651600-72652200	Enhancers	Left Ventricle	heart
47	chr11:72651600-72680400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:72651600-72680600	Weak transcription	Fetal Stomach	stomach
49	chr11:72651800-72653000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:72651800-72674600	Weak transcription	Fetal Muscle Leg	muscle

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