Variant report

Variant	rs539394563
Chromosome Location	chr11:57533000-57533001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57507427..57512619-chr11:57528805..57534217,7	K562	blood:
2	chr11:57508432..57511977-chr11:57530270..57533342,3	MCF-7	breast:
3	chr11:57532498..57533110-chr11:57545878..57546781,2	MCF-7	breast:
4	chr11:57528231..57532221-chr11:57532591..57536527,5	MCF-7	breast:
5	chr11:57527376..57533264-chr11:57564914..57570096,15	MCF-7	breast:
6	chr11:57529135..57533999-chr11:57544009..57550841,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254732	Chromatin interaction
ENSG00000198561	Chromatin interaction
ENSG00000211450	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv327	chr11:57532641-57550746	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:134 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57528600-57533400	Active TSS	Rectal Smooth Muscle	rectum
2	chr11:57528800-57533000	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:57528800-57533000	Active TSS	Left Ventricle	heart
4	chr11:57528800-57533600	Active TSS	Aorta	Aorta
5	chr11:57528800-57533600	Active TSS	Esophagus	oesophagus
6	chr11:57528800-57533600	Active TSS	Right Ventricle	heart
7	chr11:57528800-57534200	Active TSS	Right Atrium	heart
8	chr11:57529000-57533000	Active TSS	Colonic Mucosa	Colon
9	chr11:57529000-57533400	Active TSS	Stomach Mucosa	stomach
10	chr11:57529200-57533600	Active TSS	Lung	lung
11	chr11:57530400-57545800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:57530800-57533000	Flanking Active TSS	Liver	Liver
13	chr11:57531000-57533600	Enhancers	Primary T cells from cord blood	blood
14	chr11:57531200-57533000	Flanking Active TSS	HUVEC	blood vessel
15	chr11:57531200-57533000	Flanking Active TSS	K562	blood
16	chr11:57531200-57533200	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr11:57531400-57533000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:57531400-57533000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:57531400-57533400	Enhancers	Fetal Thymus	thymus
20	chr11:57531400-57543200	Weak transcription	Primary B cells from cord blood	blood
21	chr11:57531600-57533000	Flanking Active TSS	Osteobl	bone
22	chr11:57531600-57533200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:57531600-57533400	Enhancers	Primary hematopoietic stem cells	blood
24	chr11:57531800-57533000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:57531800-57533200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:57531800-57533200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:57531800-57533200	Flanking Active TSS	Brain Cingulate Gyrus	brain
28	chr11:57531800-57533200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr11:57531800-57533400	Flanking Active TSS	NHEK	skin
30	chr11:57531800-57533600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:57531800-57534600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:57531800-57538200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:57531800-57539800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:57531800-57543200	Weak transcription	Thymus	Thymus
35	chr11:57532000-57533000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr11:57532000-57533000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:57532000-57533000	Flanking Active TSS	HMEC	breast
38	chr11:57532000-57533200	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr11:57532000-57533200	Flanking Active TSS	Fetal Lung	lung
40	chr11:57532000-57533200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr11:57532000-57533400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:57532000-57534200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:57532200-57533000	Flanking Active TSS	Fetal Brain Male	brain
44	chr11:57532200-57533200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:57532200-57533200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr11:57532200-57533200	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr11:57532200-57533400	Flanking Active TSS	Fetal Intestine Large	intestine
48	chr11:57532200-57533600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:57532200-57533600	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr11:57532200-57534200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung

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