Variant report

Variant	rs539394713
Chromosome Location	chr11:17159753-17159754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPS13-3	chr11:17159523-17159812	NONHSAT018216

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv971989	chr11:17158859-17159997	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
8	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
11	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
12	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
14	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
15	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
16	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
17	chr11:17132200-17163200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:17139000-17171200	Weak transcription	Fetal Brain Female	brain
19	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
20	chr11:17143000-17163800	Weak transcription	Gastric	stomach
21	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
22	chr11:17144600-17166600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:17150800-17165800	Weak transcription	HMEC	breast
24	chr11:17150800-17172000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:17150800-17186000	Weak transcription	NHLF	lung
26	chr11:17151000-17163000	Weak transcription	Hela-S3	cervix
27	chr11:17151000-17165400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:17151000-17173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:17152400-17160400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:17153200-17160400	Strong transcription	Placenta	Placenta
31	chr11:17154600-17166600	Weak transcription	Ovary	ovary
32	chr11:17155000-17161600	Weak transcription	HSMM	muscle
33	chr11:17155000-17166600	Weak transcription	Fetal Kidney	kidney
34	chr11:17155200-17163400	Weak transcription	NHEK	skin
35	chr11:17155600-17163800	Weak transcription	Primary B cells from cord blood	blood
36	chr11:17156400-17160400	Weak transcription	Fetal Intestine Small	intestine
37	chr11:17156400-17162000	Weak transcription	Brain Substantia Nigra	brain
38	chr11:17156400-17186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:17156400-17186600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:17156600-17160000	Weak transcription	Primary T cells from cord blood	blood
41	chr11:17156600-17160000	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:17156600-17161000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:17156600-17161600	Weak transcription	Left Ventricle	heart
44	chr11:17156600-17162000	Weak transcription	Fetal Lung	lung
45	chr11:17156600-17162200	Weak transcription	Fetal Thymus	thymus
46	chr11:17156600-17163200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:17156600-17163200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:17156600-17163800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:17156600-17164000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:17156600-17164000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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