Variant report

Variant	rs539402429
Chromosome Location	chr16:82030054-82030055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
2	chr16:82030016..82033170-chr16:82033184..82035673,3	K562	blood:
3	chr16:82017852..82020203-chr16:82026768..82030109,3	K562	blood:
4	chr16:82030016..82033170-chr16:82033184..82036470,3	K562	blood:
5	chr16:82029747..82031502-chr16:82036803..82039114,2	MCF-7	breast:
6	chr16:82029300..82030846-chr16:82035555..82037101,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
3	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
4	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:82026600-82030200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:82026600-82031000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr16:82027000-82031200	Weak transcription	Fetal Lung	lung
8	chr16:82027400-82031400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr16:82027600-82030200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
12	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
13	chr16:82028200-82030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:82028200-82031800	Enhancers	Placenta	Placenta
15	chr16:82028400-82030200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr16:82028400-82030200	Weak transcription	Liver	Liver
17	chr16:82028400-82031000	Weak transcription	Pancreas	Pancrea
18	chr16:82028400-82031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr16:82028600-82030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:82028600-82032000	Enhancers	Colon Smooth Muscle	Colon
21	chr16:82028800-82031000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr16:82028800-82031400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr16:82028800-82031800	Enhancers	Stomach Smooth Muscle	stomach
24	chr16:82029000-82030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr16:82029000-82030200	Weak transcription	HMEC	breast
26	chr16:82029000-82030800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr16:82029000-82031000	Weak transcription	Fetal Intestine Small	intestine
28	chr16:82029000-82031600	Weak transcription	Gastric	stomach
29	chr16:82029000-82031800	Enhancers	Fetal Stomach	stomach
30	chr16:82029200-82031200	Enhancers	Stomach Mucosa	stomach
31	chr16:82029200-82031400	Weak transcription	Fetal Thymus	thymus
32	chr16:82029200-82032200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr16:82029600-82030400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr16:82029600-82031400	Flanking Active TSS	HUVEC	blood vessel
36	chr16:82029800-82031000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:82029800-82031600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr16:82030000-82030400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr16:82030000-82030400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr16:82030000-82030400	Enhancers	Adipose Nuclei	Adipose
41	chr16:82030000-82030400	Enhancers	Colonic Mucosa	Colon
42	chr16:82030000-82030600	Enhancers	A549	lung
43	chr16:82030000-82030800	Genic enhancers	Fetal Intestine Large	intestine
44	chr16:82030000-82031000	Genic enhancers	NHEK	skin
45	chr16:82030000-82031200	Genic enhancers	Duodenum Mucosa	Duodenum
46	chr16:82030000-82032400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr16:82030000-82034000	Strong transcription	Thymus	Thymus
48	chr16:82030000-82034800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr16:82030000-82035000	Weak transcription	GM12878-XiMat	blood
50	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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