Variant report

Variant	rs539423138
Chromosome Location	chr2:152616958-152616959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:152615094..152617806-chr2:152640783..152643681,2	K562	blood:
2	chr2:152567546..152569440-chr2:152615206..152617035,2	K562	blood:
3	chr2:152614524..152619932-chr2:152620577..152626819,11	K562	blood:
4	chr2:152616288..152619244-chr2:152629461..152632128,2	K562	blood:
5	chr2:152615094..152618024-chr2:152639649..152643681,5	K562	blood:
6	chr2:152612871..152615021-chr2:152615228..152617086,7	K562	blood:
7	chr2:152615779..152617906-chr2:152682702..152684733,2	K562	blood:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3414820	chr2:152616581-152618629	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2592137	chr2:152616645-152618365	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152595800-152620200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152597200-152618400	Weak transcription	Aorta	Aorta
3	chr2:152598200-152618600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:152609400-152617200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:152611000-152632400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:152611200-152617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:152611200-152620400	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:152611600-152622600	Enhancers	K562	blood
9	chr2:152612000-152622200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:152614600-152622000	Weak transcription	Fetal Lung	lung
11	chr2:152614600-152622200	Weak transcription	Left Ventricle	heart
12	chr2:152614600-152638000	Weak transcription	Pancreas	Pancrea
13	chr2:152615000-152622400	Weak transcription	Adipose Nuclei	Adipose
14	chr2:152615400-152622400	Weak transcription	Lung	lung
15	chr2:152615600-152623000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr2:152616200-152619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:152616400-152617200	Flanking Active TSS	HepG2	liver
18	chr2:152616400-152617200	Enhancers	HSMMtube	muscle
19	chr2:152616600-152617000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr2:152616600-152617000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:152616600-152617000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr2:152616600-152617000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:152616600-152617200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:152616600-152617200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:152616600-152617200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:152616600-152617200	Enhancers	Right Atrium	heart
27	chr2:152616600-152620200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:152616800-152617000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr2:152616800-152617000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr2:152616800-152617000	Enhancers	Esophagus	oesophagus
31	chr2:152616800-152617000	Enhancers	Gastric	stomach
32	chr2:152616800-152617200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr2:152616800-152617200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:152616800-152617200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:152616800-152618000	Weak transcription	Psoas Muscle	Psoas
36	chr2:152616800-152619800	Weak transcription	Placenta	Placenta
37	chr2:152616800-152621400	Weak transcription	Fetal Stomach	stomach
38	chr2:152616800-152622200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr2:152616800-152644400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr2:152616800-152662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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