Variant report

Variant	rs539454364
Chromosome Location	chr3:112467974-112467975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv2596946	chr3:112466909-112468471	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	esv9155	chr3:112467160-112467979	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112459000-112470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:112462600-112468000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:112464200-112468000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr3:112464200-112469200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:112464400-112469200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:112464400-112470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:112465000-112469200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:112465000-112469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:112465400-112468200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:112465800-112468000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:112465800-112470800	Weak transcription	NHDF-Ad	bronchial
12	chr3:112466000-112468000	Enhancers	K562	blood
13	chr3:112466000-112469200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:112466200-112470400	Weak transcription	NH-A	brain
15	chr3:112466200-112470400	Weak transcription	Osteobl	bone
16	chr3:112466600-112468000	Weak transcription	Placenta	Placenta
17	chr3:112467000-112468600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:112467000-112470800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:112467200-112468000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:112467200-112469400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:112467400-112468000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:112467600-112468000	Flanking Active TSS	A549	lung
23	chr3:112467600-112468200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:112467800-112468000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:112467800-112468000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:112467800-112468200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr3:112467800-112468200	Enhancers	HMEC	breast
28	chr3:112467800-112468600	Enhancers	Stomach Mucosa	stomach

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