Variant report

Variant	rs539462120
Chromosome Location	chr4:20283372-20283373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv461287	chr4:20261786-20292239	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv593791	chr4:20261786-20292239	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
2	chr4:20269200-20284600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:20273800-20286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20274600-20285600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:20274600-20286800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20274600-20288600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:20276400-20286000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:20277400-20286400	Weak transcription	Osteobl	bone
9	chr4:20278400-20284400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:20278600-20283400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:20278600-20283400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:20278800-20290400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:20278800-20298000	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:20281400-20285600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:20281800-20294000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:20282200-20283600	Enhancers	Fetal Kidney	kidney
17	chr4:20282200-20286000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:20282800-20283800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:20282800-20283800	Enhancers	NHEK	skin
20	chr4:20282800-20284600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:20282800-20285800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:20283000-20283400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr4:20283000-20283400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:20283000-20283400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:20283000-20283400	Enhancers	HMEC	breast
26	chr4:20283000-20283600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:20283000-20284600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:20283000-20286800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:20283000-20287200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:20283000-20287400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:20283200-20283400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr4:20283200-20283600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:20283200-20284000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:20283200-20284000	Strong transcription	NHDF-Ad	bronchial
35	chr4:20283200-20284600	Weak transcription	Fetal Lung	lung
36	chr4:20283200-20284800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:20283200-20285800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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