Variant report

Variant	rs539468602
Chromosome Location	chr14:55819842-55819843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55727647..55729391-chr14:55818839..55821445,2	MCF-7	breast:
2	chr14:55813775..55816746-chr14:55819381..55821287,2	MCF-7	breast:
3	chr14:55812369..55814760-chr14:55818097..55821866,3	MCF-7	breast:
4	chr14:55817121..55819281-chr14:55819678..55821286,2	MCF-7	breast:
5	chr14:55736450..55738716-chr14:55817481..55820238,2	K562	blood:
6	chr14:55736773..55740408-chr14:55819454..55822170,5	MCF-7	breast:
7	chr14:55809381..55811401-chr14:55819564..55823074,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901957	chr14:55819219-55853724	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
3	chr14:55806800-55820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:55811200-55820600	Weak transcription	Fetal Heart	heart
6	chr14:55813600-55837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:55814000-55830400	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
9	chr14:55815400-55820600	Weak transcription	Psoas Muscle	Psoas
10	chr14:55816000-55837200	Weak transcription	K562	blood
11	chr14:55816200-55820600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:55816400-55823600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:55816600-55823000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:55817000-55820000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:55817000-55820000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr14:55817000-55820000	Strong transcription	Osteobl	bone
17	chr14:55817000-55820200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:55817000-55821000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:55817000-55822800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:55817200-55820000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:55817200-55820000	Strong transcription	Liver	Liver
22	chr14:55817200-55820000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr14:55817200-55820000	Strong transcription	HMEC	breast
24	chr14:55817200-55820000	Strong transcription	NHDF-Ad	bronchial
25	chr14:55817200-55820200	Strong transcription	Fetal Intestine Large	intestine
26	chr14:55817200-55821000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:55817200-55822800	Strong transcription	GM12878-XiMat	blood
28	chr14:55817200-55823000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:55817200-55823200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:55817200-55823200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:55817200-55823800	Strong transcription	Dnd41	blood
32	chr14:55817200-55826200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr14:55817200-55826400	Strong transcription	Fetal Stomach	stomach
34	chr14:55817400-55820600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:55817400-55820600	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr14:55818000-55820800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr14:55818000-55820800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:55818000-55841800	Weak transcription	Hela-S3	cervix
39	chr14:55818200-55820000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:55818200-55842800	Weak transcription	Brain Angular Gyrus	brain
41	chr14:55818200-55877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:55818400-55820800	Weak transcription	A549	lung
43	chr14:55818400-55821800	Weak transcription	Fetal Lung	lung
44	chr14:55818400-55832400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:55818400-55858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr14:55818800-55820400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr14:55818800-55820600	Weak transcription	Stomach Mucosa	stomach
48	chr14:55818800-55821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:55818800-55821000	Weak transcription	Brain Substantia Nigra	brain
50	chr14:55818800-55842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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