Variant report

Variant	rs539476559
Chromosome Location	chr3:43030070-43030071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv236200	chr3:43029502-43031844	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43021400-43030200	Weak transcription	Aorta	Aorta
2	chr3:43022000-43033000	Weak transcription	Pancreas	Pancrea
3	chr3:43022000-43037000	Weak transcription	Right Atrium	heart
4	chr3:43022200-43032800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:43023000-43037800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:43026600-43030400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:43026600-43032000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:43026600-43032400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:43026600-43032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:43026800-43030200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:43026800-43032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:43027000-43033200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:43027200-43032800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:43027400-43032200	Weak transcription	Fetal Thymus	thymus
15	chr3:43029600-43030400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:43029600-43030400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:43029600-43030400	Enhancers	Brain Angular Gyrus	brain
18	chr3:43029600-43030400	Enhancers	Gastric	stomach
19	chr3:43029600-43030400	Enhancers	Ovary	ovary
20	chr3:43029600-43030800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:43029600-43030800	Enhancers	Liver	Liver
22	chr3:43029600-43031600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:43029800-43030200	Enhancers	Brain Hippocampus Middle	brain
24	chr3:43029800-43030600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:43029800-43030800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr3:43029800-43030800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:43029800-43030800	Enhancers	Brain Substantia Nigra	brain
28	chr3:43029800-43033200	Weak transcription	Esophagus	oesophagus
29	chr3:43030000-43030400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:43030000-43030400	Enhancers	Adipose Nuclei	Adipose
31	chr3:43030000-43030400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr3:43030000-43030800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr3:43030000-43032400	Weak transcription	Fetal Muscle Leg	muscle

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