Variant report

Variant	rs539481950
Chromosome Location	chr6:118632375-118632376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118627800-118638000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118627800-118641000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118629000-118640800	Weak transcription	Fetal Brain Female	brain
4	chr6:118629200-118635200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118629200-118640600	Weak transcription	Ovary	ovary
6	chr6:118629200-118641000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:118629400-118640600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:118630600-118640800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:118631400-118634000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:118631400-118634400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:118631400-118635000	Weak transcription	Left Ventricle	heart
12	chr6:118631400-118638800	Weak transcription	Brain Germinal Matrix	brain
13	chr6:118631400-118640600	Weak transcription	Psoas Muscle	Psoas
14	chr6:118631600-118634800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:118631600-118635200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:118631600-118637000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:118631600-118638800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:118632000-118633400	Weak transcription	Fetal Heart	heart
19	chr6:118632200-118633000	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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