Variant report

Variant	rs539484267
Chromosome Location	chr9:115821990-115821991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr9:115821887-115822376	HEK293	kidney:	n/a	n/a
2	POLR2A	chr9:115821838-115822426	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr9:115821930-115822368	SK-N-MC	brain:	n/a	n/a
4	YY1	chr9:115821960-115822202	SK-N-SH_RA	brain:	n/a	n/a
5	GABPA	chr9:115821761-115822119	K562	blood:	n/a	n/a
6	SETDB1	chr9:115821768-115822156	U2OS	brain:	n/a	chr9:115821874-115821898

Variant related genes	Relation type
ZFP37	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv508563	chr9:115800632-115855728	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv6672	chr9:115811030-115856455	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv825051	chr9:115811606-115882022	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv825052	chr9:115811634-115882048	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv525545	chr9:115814473-115862852	ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv466492	chr9:115814473-115866273	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv615205	chr9:115814473-115866273	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv466493	chr9:115815398-115867276	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv615206	chr9:115815398-115867276	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv893734	chr9:115815398-115891009	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv2757353	chr9:115815398-115892245	ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv8562	chr9:115818667-115854598	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2753302	chr9:115819870-115888112	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	esv1826828	chr9:115820538-115853335	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1038932	chr9:115820554-115867512	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv20594	chr9:115820908-115855538	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv972802	chr9:115821036-115852008	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
23	esv3418153	chr9:115821131-115853729	Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3437370	chr9:115821231-115835029	Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	esv3395756	chr9:115821331-115853429	Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv1803683	chr9:115821845-115852353	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv1806930	chr9:115821845-115852353	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
28	esv1809073	chr9:115821845-115852353	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
29	esv1829272	chr9:115821845-115852353	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
30	esv1831283	chr9:115821845-115852353	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
31	nsv893735	chr9:115821854-115891009	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	esv3430587	chr9:115821931-115850829	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
33	esv3383727	chr9:115821931-115853429	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115793000-115822200	ZNF genes & repeats	Liver	Liver
2	chr9:115817600-115822400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
3	chr9:115817800-115822400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr9:115818200-115822600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr9:115819800-115822600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:115820400-115822000	ZNF genes & repeats	Aorta	Aorta
7	chr9:115821000-115822000	ZNF genes & repeats	Pancreas	Pancrea
8	chr9:115821000-115822000	ZNF genes & repeats	Right Ventricle	heart
9	chr9:115821000-115822200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
10	chr9:115821000-115822200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr9:115821000-115822200	ZNF genes & repeats	Right Atrium	heart
12	chr9:115821000-115822400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:115821200-115822200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr9:115821200-115822200	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr9:115821200-115822400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr9:115821200-115822600	ZNF genes & repeats	Ovary	ovary
17	chr9:115821400-115822200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr9:115821400-115822200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
19	chr9:115821400-115822200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:115821400-115822600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:115821600-115822000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:115821600-115822000	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr9:115821600-115822200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:115821800-115822000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:115821800-115822000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
26	chr9:115821800-115822000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:115821800-115822000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:115821800-115822000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:115821800-115822000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:115821800-115822000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:115821800-115822000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
32	chr9:115821800-115822200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:115821800-115822200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr9:115821800-115822200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr9:115821800-115822200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
36	chr9:115821800-115822200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:115821800-115822200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:115821800-115822200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:115821800-115822200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
40	chr9:115821800-115822200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
41	chr9:115821800-115822200	Bivalent/Poised TSS	Fetal Kidney	kidney
42	chr9:115821800-115822200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
43	chr9:115821800-115822200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
44	chr9:115821800-115822200	Bivalent/Poised TSS	Thymus	Thymus
45	chr9:115821800-115822400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr9:115821800-115822400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr9:115821800-115822400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:115821800-115822400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
49	chr9:115821800-115822400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr9:115821800-115822600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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