Variant report

Variant	rs539490568
Chromosome Location	chr1:223430260-223430261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223423800-223439600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:223424200-223438800	Weak transcription	Ovary	ovary
3	chr1:223424400-223431800	Weak transcription	Fetal Intestine Small	intestine
4	chr1:223427400-223442000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:223428400-223432200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:223429000-223430400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:223429000-223430400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:223429200-223430400	Enhancers	HMEC	breast
9	chr1:223429600-223431600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:223429600-223431800	Strong transcription	Primary T cells from cord blood	blood
11	chr1:223429800-223431400	Weak transcription	A549	lung
12	chr1:223429800-223431800	Weak transcription	Stomach Mucosa	stomach
13	chr1:223430200-223431800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:223430200-223431800	Weak transcription	NHEK	skin
15	chr1:223430200-223432000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:223430200-223432000	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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