Variant report

Variant	rs539492239
Chromosome Location	chr3:160666000-160666001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv979895	chr3:160664994-160666094	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160658800-160667400	Weak transcription	Thymus	Thymus
2	chr3:160659800-160666000	Weak transcription	Fetal Kidney	kidney
3	chr3:160663400-160666200	Weak transcription	Psoas Muscle	Psoas
4	chr3:160665800-160666600	Enhancers	Fetal Intestine Large	intestine
5	chr3:160665800-160666800	Enhancers	Liver	Liver
6	chr3:160666000-160666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:160666000-160666200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:160666000-160666400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:160666000-160666600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:160666000-160667400	Enhancers	Fetal Kidney	kidney
11	chr3:160666000-160668000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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