Variant report

Variant	rs539511096
Chromosome Location	chr1:76269171-76269172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76261350..76264622-chr1:76266576..76269506,4	MCF-7	breast:
2	chr1:76259028..76263655-chr1:76264104..76269438,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000057468	Chromatin interaction
ENSG00000137955	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76262400-76269400	Weak transcription	NHDF-Ad	bronchial
2	chr1:76262400-76273200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76262400-76282800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:76262600-76288800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:76262600-76294600	Weak transcription	Primary B cells from cord blood	blood
6	chr1:76263000-76269400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:76263000-76276600	Weak transcription	Gastric	stomach
8	chr1:76263000-76287400	Weak transcription	Aorta	Aorta
9	chr1:76263000-76289000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:76263000-76296200	Weak transcription	Ovary	ovary
11	chr1:76263200-76277000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:76263400-76289000	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:76263600-76284000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:76264000-76269400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:76264000-76270600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:76264000-76274200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:76264000-76277000	Weak transcription	HUVEC	blood vessel
18	chr1:76264200-76274800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:76264200-76279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:76264200-76291400	Weak transcription	Psoas Muscle	Psoas
21	chr1:76264600-76273600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:76264600-76278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:76264600-76288600	Weak transcription	Left Ventricle	heart
24	chr1:76264800-76277000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:76264800-76288600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:76264800-76288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:76265600-76270200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:76266000-76272800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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