The 2.0 version of rSNPBase

Variant report

Variant rs539511608
Chromosome Location chr10:61549786-61549787
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:61537600-61582800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr10:61540000-61551600 Weak transcription Fetal Lung lung
3 chr10:61540200-61550200 Weak transcription Fetal Muscle Trunk muscle
4 chr10:61540200-61550400 Weak transcription NH-A brain
5 chr10:61540200-61551600 Weak transcription Muscle Satellite Cultured Cells --
6 chr10:61540200-61551600 Weak transcription Brain Anterior Caudate brain
7 chr10:61540200-61551600 Weak transcription Brain Cingulate Gyrus brain
8 chr10:61540200-61551800 Weak transcription Brain Germinal Matrix brain
9 chr10:61540200-61551800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr10:61540200-61552200 Weak transcription Fetal Stomach stomach
11 chr10:61540200-61562800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr10:61540800-61551600 Weak transcription HSMM muscle
13 chr10:61541000-61550400 Weak transcription Fetal Muscle Leg muscle
14 chr10:61541400-61551400 Weak transcription Hela-S3 cervix
15 chr10:61541400-61551400 Weak transcription HSMMtube muscle
16 chr10:61544200-61551400 Weak transcription Brain Hippocampus Middle brain
17 chr10:61544400-61550400 Weak transcription Primary T cells from cord blood blood
18 chr10:61544600-61550400 Weak transcription H1 Cell Line embryonic stem cell
19 chr10:61544800-61550200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr10:61545000-61552400 Weak transcription Colonic Mucosa Colon
21 chr10:61545200-61563200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr10:61545600-61551800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr10:61545800-61563200 Weak transcription Spleen Spleen
24 chr10:61546200-61550000 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr10:61546200-61551400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr10:61546200-61551400 Weak transcription A549 lung
27 chr10:61546200-61552400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr10:61546200-61553800 Weak transcription Stomach Mucosa stomach
29 chr10:61546400-61550200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr10:61546600-61552400 Weak transcription Pancreas Pancrea
31 chr10:61546800-61550000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr10:61546800-61550200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr10:61546800-61550400 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr10:61546800-61550400 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr10:61546800-61550400 Weak transcription Fetal Thymus thymus
36 chr10:61546800-61551000 Weak transcription HMEC breast
37 chr10:61546800-61552000 Weak transcription Fetal Brain Female brain
38 chr10:61546800-61552200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr10:61547000-61550200 Weak transcription Primary T cells fromperipheralblood blood
40 chr10:61547000-61552000 Weak transcription HUVEC blood vessel
41 chr10:61547200-61549800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr10:61547200-61550400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr10:61547200-61551800 Weak transcription Left Ventricle heart
44 chr10:61547200-61552400 Weak transcription Aorta Aorta
45 chr10:61547200-61552400 Weak transcription Gastric stomach
46 chr10:61547200-61554800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr10:61547400-61550200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr10:61547400-61551400 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr10:61547400-61551800 Weak transcription Esophagus oesophagus
50 chr10:61547400-61552400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015